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@evanspencer3819 Күн бұрын
Is it farly simple to add covariates to the model for cjs? @DrJBanta
@evanspencer3819 5 күн бұрын
Thanks for the content. Really awesome. Any interest in adding more to the rmark modeling? Specially, interested in expanding the cjs modeling with interpretation, and other relevant info. I'm starting my own modeling journey with some capture data and I can use all the instructions I can get! Thanks.
@DrJBanta 11 сағат бұрын
@@evanspencer3819 thank you for the positive feedback. Doesn't the tutorial show how to do a CJS model at the end?
@DrJBanta 11 сағат бұрын
Can't remember but I think it does.
@SyedaAbrish-hy5hp 20 күн бұрын
What is the difference between jecknif and response curve
@DrJBanta 19 күн бұрын
The jackknife of training gain / test gain / AUC refers to models that contain only one variable or that leave out exactly one variable. These models were all run automatically as part of the Maxent software. The idea is that you can see how much of the full model fit (test gain) or other metrics is accounted for by a single variable by itself or, alternatively, how much the model fit is dependent on a single variable (decrease in fit when not present.) Response curves, on the other hand, show habitat suitability as a function of each environmental variable included in your model. The purpose is to understand which specific subsets of the environment your species is associated with. For more information, see: kzbin.info/www/bejne/kKCmdYdng7angLssi=HLH_GCqrF546Fmne
@mixvideo220 Ай бұрын
Sir really very informative i red a lot to understand about the whole process that how this identity test work and now i am fully cleared after watching this video tutorial. so nice step by step explaination. thanks sir❤
@koarschten1408 Ай бұрын
Hey. First I want to thank you very much. Unfortunately, I get some errors when it runs the enmevaluate function in parallel. Memory errors and my PC shutted down one time (32Gb RAM, Ryzen 7 3700x). Do you have any idea? I am working in windows 11.
@DrJBanta Ай бұрын
@@koarschten1408 hello, I would turn parallel off. I had similar issues. Unfortunately R in general is buggy with parallelization. Can you download the script, too? I've updated it. Best, Josh
@koarschten1408 Ай бұрын
@DrJBanta ah okay thanks. Yes I realized that parralizing was the Problem and was able so solve it. Do you have an Idea how to import my own pseudo absence dataset to your Code? I have issues with randomization because the species I want to model is already wideapread to my study area. I want them to only be sampled in cells where no presence Point is. Im new to sdms especially maxent. Thank you very much in advance, your Code helped me a lot
@DrJBanta Ай бұрын
@@koarschten1408 I'm not sure you'd want to do that. But if you did:
@DrJBanta Ай бұрын
replace this line: bg <- xyFromCell(dens.ras2, sample(which(!is.na(values(subset(env, 1)))), bg.use, prob=values(dens.ras2)[!is.na(values(subset(env, 1)))])); colnames(bg) <- colnames(occ)
@DrJBanta Ай бұрын
with this line: bg <- read.csv("YOUR_FILENAME.csv")
@SehrishBashir2218 Ай бұрын
Hi... I need some help please reply
@DrJBanta Ай бұрын
Hello, what issues are you encountering?
@TanzeelaArshad-n7e Ай бұрын
I got the following error. regarding reinstalling all paclages. I am running this code in Rstudio as bspm doesnt work in terminal. I am using Ubuntu 24. > setwd ('/home/tanzeela/Downloads') > bspm::enable() Tracing function "install.packages" in package "utils" > to_reinstall <- read.csv ('/home/tanzeela/Downloads/r.packages.csv') > install.packages(to_reinstall[,1], dependencies = TRUE, ask = FALSE) Error: dbus: Call failed: Launch helper exited with unknown return code 1
@TanzeelaArshad-n7e Ай бұрын
At the step "bspm::enable()" it said there is no package called "bspm". I followed all the steps correctly from the beginning of the video. I am using Ubuntu 24
@DrJBanta Ай бұрын
@@TanzeelaArshad-n7e try running install.packages("bpsm") from within Rstudio
@shittuaoluniyi2535 Ай бұрын
hi prof and thanks for this wonderful lecturer. I tried the scripts but I was not able to get the figures
@DrJBanta Ай бұрын
Hello, did you set your working directory? The figures should be in a file in your working directory. Best, Josh
@SaroyanJacob-v7s Ай бұрын
Mary Ferry
@FuelMerch Ай бұрын
Charlene Walks
@KarenBarrett-n9q Ай бұрын
Melody Mountain
@VanGregary 2 ай бұрын
4145 Schuster Fort
@b______k______.253 2 ай бұрын
Sir , I am facing the payment "Declined" issue , How can it be solved?
@DrJBanta Ай бұрын
The only solution that seems to work is to use a different credit card. Best, Josh
@bettezra-n6d 2 ай бұрын
I get this error everytime I try to install the R package (base) ezra@HP-Pavilion-Gaming-Laptop:~$ sudo apt -y install r-base gdebi-core [sudo] password for ezra: Reading package lists... Done Building dependency tree... Done Reading state information... Done Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: r-base-core : Depends: libicu70 (>= 70.1-1~) but it is not installable Depends: libtiff5 (>= 4.0.3) but it is not installable Recommends: r-base-dev but it is not going to be installed E: Unable to correct problems, you have held broken packages.
@DaisyKeith-f4i 2 ай бұрын
030 Libbie Gateway
@charliealba83 2 ай бұрын
Set up my moca 2.5 adapter (hitron) all my lights are flashing but no data transfer, can you please help?
@johncgibson4720 2 ай бұрын
OMG, Best explanation of haplotype analysis ever.
@nandakishorevj1454 2 ай бұрын
Thanks
@PowellGeorge-m7p 2 ай бұрын
89768 Kulas Cliff
@EzekielBunyan-i5o 2 ай бұрын
Lydia Flat
@Madhushree.VMadhu 2 ай бұрын
It was really very useful thing, Thanks Prof. Josh. i have tried it and almost got the result but the thing is i have got it for global but i needed it for particular region. i have seen your maxent settings video also but i couln't figure it out can you please suggest which settings or protocol should be followed to obtain for particular study region. thanks in advance
@WilmottElmer-c9f 2 ай бұрын
Constance Viaduct
@RobesonLizzie-d3s 2 ай бұрын
Satterfield Rue
@chloetaft6664 2 ай бұрын
9826 Luther Pass
@santiagoramirezacosta3799 3 ай бұрын
Thank you for this
@Yash-vs8rt 3 ай бұрын
Great video. Hope to see a follow along practical tutorial with script and example.
@alexaesekellyry5942 3 ай бұрын
Lakin Flat
@AlvinJaramillo-u3j 3 ай бұрын
Kris Point
@RuthPotts-t6q 3 ай бұрын
Viva Union
@RoyEdwards-d9n 3 ай бұрын
Torrance Curve
@TheresaLarry-r3t 3 ай бұрын
Jarret Brooks
@JennyBurrell-j9n 3 ай бұрын
Jenkins Turnpike
@ChessBreeder 3 ай бұрын
How to determine the length of burnin period in structure?
@rjfabreu 3 ай бұрын
Thank you for the excellent video, I have a question for you. I have a set of points (15) where samples containing different bryophyte species have been collected. My question is whether it is possible to estimate SDM using only these points. The scale is an island.
@DrJBanta 3 ай бұрын
It depends what you are trying to accomplish with your project. Are you considering modeling bryophytes as a whole, or focusing on a specific species?
@ThomasHunter-z2r 3 ай бұрын
great stuff, thanks
@veronicaguidalevich3704 3 ай бұрын
Genio, me ahorraste tantos dolores de cabeza
@arifshahariar4519 3 ай бұрын
I am facing a problem related to Mismatch distribution in Arlequin software... It would be great if you could help me.
@DrJBanta 3 ай бұрын
Hello, not sure what you mean. Can you provide more detail? Best, Josh
@arifshahariar4519 3 ай бұрын
@@DrJBanta i have mailed you... If you want i can share the arp file also
@DrJBanta 3 ай бұрын
@@arifshahariar4519 I do not see any emails from you. Best, Josh
@arifshahariar4519 4 ай бұрын
Hello sir.... Can I use DnaSP6 to turn the fasta file into an arlequin file?
@DrJBanta 3 ай бұрын
Hello, I believe you can, sort of, but my experience is that other tools do a terrible job at it. To do it right, I suggest using my tutorial. Best wishes, Josh
@NizhneaNieles 4 ай бұрын
Sir my payment always says " Declined" i do really need the R script
@DrJBanta 4 ай бұрын
Hello, I am sorry to hear that. I replied to you on Patreon. I hope it will work! Sincerely, Josh
@katiahernandezbolanos5419 5 ай бұрын
Thanks a lot! Since I met your channel I can understand some topics. I am going to do the phylogenetically independent contrasts for my thesis degree. I am going to evaluate if there is a correlation between substitution rates and history life traits like body mass, longevity and dietary habits. I need to learn more about this method but I can try with this tutorial! sorry for my english. Regards
@DrJBanta 5 ай бұрын
@@katiahernandezbolanos5419 that's great to hear!
@universal7564 5 ай бұрын
Don't trust adntro. Fake results. Doesn't reflect my ancestry. I wasted 30 euro for nothing. Don't waste your money uploading your DNA result from other companies to adntro.
@dr.farazakrim2239 5 ай бұрын
Superb
@Prajakta-s3s 5 ай бұрын
Thankyou sir the video is really useful
@LASCH_B10 5 ай бұрын
very nice video, and for taking your time to give instructions for each OS
@rashawnhoward564 5 ай бұрын
Thank you! first time using linux, found an old 2011 macbook pro 17in replaced OS w/Ubuntu and thought why not use it for coding.
@DrJBanta 5 ай бұрын
Great! Be sure to bookmark this video, too: kzbin.info/www/bejne/aYPJnaRmmL-SZ9Esi=gXNz5S8Qvo_Vbo3G . Sooner or later you will encounter problems installing R packages on Linux. This video will show you how to fix it. There are some exceptions, where it is also required to install programs on Linux separate from R, but this tutorial will fix many problems you'll encounter.
@jayrome3932 6 ай бұрын
Excellent! Clear, concise and accurate instructions!!
@havangioi 6 ай бұрын
Thank sir, it is a great tutorial.
@DuongNguyen-pe1nr 6 ай бұрын
Sorry teacher I have a question, when I add code ./structure -K 1 -o k1run1.txt;....into Windows terminal, it didnot show the information like you that after I press enter the Windows terminal ran and showed "PS C:\Users\user\Pictures\console>" again. I hope you can help me solve this problem. Thank you a lot.
@DrJBanta 6 ай бұрын
Hello, the easiest way to ensure STRUCTURE will run properly is to use my preconfigured virtual machine using VirtualBox. kzbin.info/www/bejne/Y3ybk6yKhNWHj5Y
@DuongNguyen-pe1nr 6 ай бұрын
@@DrJBanta thank you teacher, I already make the Structure from your tutorial, it is so great😍
@nicolephoebevalenzuela1322 6 ай бұрын
What if the sequence file is already in fasta format? Is it alright to skip line 11-13?
@DrJBanta 6 ай бұрын
No, you must run lines 11 - 13. Also, your data must be in FASTA format for this tutorial anyway. Best, Josh
@nicolephoebevalenzuela1322 5 ай бұрын
@@DrJBanta Thank you that helped a lot! However when I ran the code using my own files it resulted in this error Error in cor(as.vector(xdis), ydis, method = method, use = use) : missing observations in cov/cor. I tried to look for any missing values but couldn't find anything out of the ordinary.
@DrJBanta 5 ай бұрын
@@nicolephoebevalenzuela1322 Dear Nicole, were you able to get the tutorial to run using the same data? Have you compared your data to the sample data? Best, Josh