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@adibshaheen343
@adibshaheen343 2 ай бұрын
you are not explaining why u r doing each step tho :(
@humarafique3093
@humarafique3093 2 ай бұрын
Hi, I only have genes list, how can i make my input like this what you've shown in the video as input file.csv?
@MalithArambage
@MalithArambage 6 ай бұрын
This video is Excellent. To the point, simple and clear! Thanks mate!
@gershonanim6072
@gershonanim6072 2 жыл бұрын
HI Trey, I do not find the shared interaction on my version (3.9.1). where could it be
@TreySaddler
@TreySaddler 2 жыл бұрын
It seems like it really is time for me to make a new video. Many things have changed inside Cytoscape since I first made this one. So I'm not 100% sure where the shared interaction thing would be at this moment but I will get back to you on that.
@gershonanim6072
@gershonanim6072 2 жыл бұрын
@@TreySaddler Thanks so much. I found it.
@mehwishwahid183
@mehwishwahid183 3 жыл бұрын
hi can someone guide me how can I save my analysis results in excel file using cytoscape
@johirislam8174
@johirislam8174 3 жыл бұрын
Hi,I want to visualize my PPI network into cytoscape.But my ppI node are 661 and edges are 680 and seeds are 15.So i feel problem of visualizing it into cytoscape.Because of huge number of nodes and edges. So how can i visualize this .I mean to say I want to know the way that can visualize all the interacted nodes clearly. Clearly means all the lebels are being clearly watched in manuscript.
@TreySaddler
@TreySaddler 3 жыл бұрын
You can experiment with changing node and edge parameters, such as transparency, size, and color to try and emphasize certain features. But in general the best strategy to try and create a more usable network is to reduce or group the number of nodes and edges if possible, or to only display labels for the nodes that are most important.
@johirislam8174
@johirislam8174 3 жыл бұрын
@@TreySaddler which basis i should reduce the noded and edges?And how can i only display the nodes?
@johirislam8174
@johirislam8174 3 жыл бұрын
Hi i analyzed my PPI netwrok by clustalviz which is cytoscape plugin.Here the results came by rank.So now i am confused which one i should pick.
@mehmetalibozbay5282
@mehmetalibozbay5282 3 жыл бұрын
kurdish sniper vr #kurdishsniper vr
@KainBAl
@KainBAl 3 жыл бұрын
hi Trey Saddler very good and informative tutorial!!!! Can I ask you a question? I am new to cytoscape and I am trying to learn how to use it. When you import a String network into cytoscape and I want to see protein clusters in that network. How can I then assign a specific biological function to a specific group of proteins. I mean rather, as I have seen in some papers, which show a network and then they circulate, for example, in red, different groups of proteins with their specific biological function. How can i achieve this?
@joshua43214
@joshua43214 3 жыл бұрын
Please don't waste our time using the "pretty" sample data, any moron can follow that from the man page. Try using real data. Downvoted
@sumitkumar-el3kc
@sumitkumar-el3kc 4 жыл бұрын
How can I identify non-human proteins in a given network in Cytoscape?
@WhiteHFS
@WhiteHFS 4 жыл бұрын
My COMMON column appears invisible. I mean, no data is visualized
@noorulain7302
@noorulain7302 4 жыл бұрын
you should also teach how to arrange a particular data set for input. using sample data is so confusing for me
@jagdishchand9321
@jagdishchand9321 4 жыл бұрын
Hello can you help me to make my excel sheet data of my own synthesized compounds.
@yeyefortcheka
@yeyefortcheka 5 жыл бұрын
thank you!
@MelchiorVA
@MelchiorVA 5 жыл бұрын
Thank you so much, This helped me a lot while playing! Whats your ign? Then I can tell you how amazing you are if I see in you ingame
@imrankhanbbt
@imrankhanbbt 5 жыл бұрын
Great work, and most helpful.. thank you
@chowdhurymh5527
@chowdhurymh5527 5 жыл бұрын
Can you do one detail tutorial covering network with edge weight, network co-ordinate, centrality measurememt, etc? Like what cytoscape example network looks like, but don't know how to do that. So it would be much appreciated and helpful for us....
@TreySaddler
@TreySaddler 5 жыл бұрын
Sure, will do!
@chowdhurymh5527
@chowdhurymh5527 5 жыл бұрын
Hi Trey, Thanks. It would great if you could do it as soon as possible. Thanks
@arkodasgupta9608
@arkodasgupta9608 6 жыл бұрын
Most helpful Cytoscape tutorial I have come across! Cheers!
@falibu
@falibu 7 жыл бұрын
wow this is a great informational video and the thing is, i came here from the Stand Out Discord. this information is still relevant there :)
@TreySaddler
@TreySaddler 7 жыл бұрын
Eddie Balderas Good to know!
@slothslothington2096
@slothslothington2096 7 жыл бұрын
I loved this game but then people stopped playing
@omegapointsingularity6504
@omegapointsingularity6504 7 жыл бұрын
this is the best game I have ever seen on virtual reality
@TreySaddler
@TreySaddler 7 жыл бұрын
Omega Point Singularity Unfortunately it's been all but abandoned now by the developers and player base. The developers have switched to working on "Stand Out", a VR Playerunknown's Battlegrounds clone. They've incorporated some of the features from Art of Fight into that game if you're interested.
@mudai_
@mudai_ 7 жыл бұрын
This is really dope. Do you think you'll be doing some multiplayer gameplay vids?
@TreySaddler
@TreySaddler 7 жыл бұрын
Check out my Twitch @ twitch.tv/onawa56. I have quite a few longer clips of actual gameplay on there.
@darrelbabyduck
@darrelbabyduck 7 жыл бұрын
You should do a gameplay video! It would be really cool to see how a "pro player" thinks :D
@TreySaddler
@TreySaddler 7 жыл бұрын
Check out my Twitch @ twitch.tv/onawa56. I have quite a few longer clips of actual gameplay on there.
@Stone815
@Stone815 7 жыл бұрын
for the love of god can someone figure out movement in vr so stuff like this is looked back on and laughed at!!
@MarsMalo
@MarsMalo 7 жыл бұрын
EXCELLENT.
@TreySaddler
@TreySaddler 7 жыл бұрын
Mars Malo Thank you good sir. Been a while since we've seen you in game.
@MarsMalo
@MarsMalo 7 жыл бұрын
Trey Saddler I pop in every now and again
@tylerrivel4878
@tylerrivel4878 7 жыл бұрын
Very good tutorial. Keep them coming. I would like to see where you like to go off the bat as blue and as red to get some fast noob kills. On sand and maybe rooftop.
@TreySaddler
@TreySaddler 7 жыл бұрын
Tyler Rivel I'm gonna shoot for another video this Saturday on that exact thing, thanks for watching!
@icryo
@icryo 7 жыл бұрын
Excellent video, you did a great job articulating your thoughts. I'd like to see you navigate more maps within this game.
@TreySaddler
@TreySaddler 7 жыл бұрын
Austin marck I will be doing more videos soon where I do just that. I'll be showing some of my favorite routes through maps and good spots to hold and watch. Thanks for watching!
@khrex9
@khrex9 7 жыл бұрын
This game is so much fun! Thanks for the tutorial man. Will definitely help me
@fartfiknugen
@fartfiknugen 7 жыл бұрын
Great tutorial! think I might pick the game up now lol.