coool

How did you prepare the system including membrane, ions, water, protein. Have you used membrane builder in VMD?

7:45

3:27

3:16

A hidden gem lecture. Thanks a lot.

How do we download and install adcp 1.1 ? On website links to v1.1 are not working

It will be good to the beginners to share the script

Thank you so much

Thank you for great video and uploading this!

how to perform adcp docking using the peptide conformation, rather than sequence?

Also, how do I move an arm in oxView? Not the three.js version-- the original. I can select it but when I hit 'Move to' it moves where it wants to, not where I would like.

What command line do I use to build sequence for pentapeptide glycine residue

👏👏👏

Thank you for posting this instructional video. I appreciate the lucid overview from Dr. Dawson - helps me sort of understand what I have been trying to do - LoL.

Was the hands-on session recorded?

Excellent, lucid presentation. Can we expect a step by step set up and walk through of the tutorial?

Mam please made video on CpH MD simulations with AMBER

Hello. I got some new insights from the lecture. But I got a few questions. 1. Like if RMSD is not a perfect metric to analyse equilibration because it gives an inadequate impression of the 'potential wells' in which the system maybe present, then what would be the correct metrics to understand equilibration? 2. For example, if radius of gyration is also dependent on the position of atoms then how is it much different from RMSD when it comes to measuring stability? Is it a more closer representation of the real potential energy surfaces than RMSD??

Nice video thanks for making it useful

so touching for an excellent video

QM/MM MD is cool, and you also mentioned the TS stablization to the barrier difference

helpful.