Introduction to the Pharmaverse
1:01:52
Visual Studio Code for Pharma
1:27:47
Observable Plots
1:49:16
8 ай бұрын
Version Control with Git & RStudio
2:38:00
Generating TLGs using NEST / Falcon
2:08:39
Quarto All the Things!
3:05:23
8 ай бұрын
Пікірлер
@dkaczmarek9140
@dkaczmarek9140 13 күн бұрын
Thank you for your presentation. I wish I would have had opportunity to work on this transition. Really seems like it is so helpful to the company also helpful to SAS programmers to transition in their career as this is the way things are going. Look at the job requirements, all of these other languages are now, wanted.
@JD-xu6py
@JD-xu6py Ай бұрын
Quarto is great! And even better than Latex can use Quarto with Typst!
@canarese
@canarese Ай бұрын
Its great for learning. I am getting errors such as Deprecated etc. Have any updated one?
@kennedymwavu
@kennedymwavu 2 ай бұрын
this is so cool!
@Smackerz1988
@Smackerz1988 2 ай бұрын
Someone's an AEW Fan
@hemantishwaran5741
@hemantishwaran5741 2 ай бұрын
Really great. Just wish you’d do things in base R. I’m an advanced user and avoid ggplot and tidyverse so wish you’d stop pushing those tools
@suryoputr9344
@suryoputr9344 2 ай бұрын
I'm a newbie in R. Can you explain why would you avoid ggplot and tidyverse? Is there something inherently wrong in them?
@hemantishwaran5741
@hemantishwaran5741 2 ай бұрын
@@suryoputr9344 As a developer, simpler is better. You want code that is easy to debug, easy to understand, and that will stand the test of time. Just using one command of tidyverse in an R package commits you to its ridiculously large number of dependencies which makes your code less stable. As for ggplot, it produces beautiful figures very quickly, but for EDA purposes you don't often need that and you will end up wasting time. Especially if you want to tweak your plot in any way that is different. As a newbie, you might appreciate the ease at which you can generate high quality graphics and the seemingly easy way to manipulate data with tidy verse, but as you get more advanced you will recognize them as being overly complicated.
@djangoworldwide7925
@djangoworldwide7925 Ай бұрын
​@@suryoputr9344No reason. Learn and use the tidyverse.
@eubutuoy
@eubutuoy 2 ай бұрын
What if you need to optimize two parameters from two different studies? For example, ka from oral bolus in vivo data and clearance from iv study? How do you optimize ka and clearance to fit both studies with one pbpk model?
@sunilgupta2156
@sunilgupta2156 2 ай бұрын
Thanks for a great presentation!
@mursalimali1629
@mursalimali1629 3 ай бұрын
O
@marwolaeth111
@marwolaeth111 3 ай бұрын
That's fascinating! 🤩 Your team makes some of my dreams come true. I'll try my best to make the best use of it
@johnhhu2137
@johnhhu2137 3 ай бұрын
cool
@haraldurkarlsson1147
@haraldurkarlsson1147 4 ай бұрын
This is a very well constructed lecture and reproducible (all the data and source code is given on github). A nice scaffold to build your own lectures on and expand. My only complaint is that the transitions are often not clear and bit rugged (e.g. spend a lot time on LASSO but then use Logistic Regression).
@haraldurkarlsson1147
@haraldurkarlsson1147 4 ай бұрын
If you are worried about which columns are picked in step_normalize() and you all want columns with values greater than 1 then I believe this code works: step_normalize(where(~is.numeric(.x) && any(.x > 1))). Now what the author uses in the video is more straight forward and thus simpler but if you have a lot of columns the first approach might be safer.
@haraldurkarlsson1147
@haraldurkarlsson1147 4 ай бұрын
It is hard to sit there and look at a relatively small font (I know you can expand the view) on a light background and not get eye strain. I recommend using a dark background in RStudio.
@haraldurkarlsson1147
@haraldurkarlsson1147 4 ай бұрын
If you are starting out with tidymodels then yo might be confused since a little of details are left out. Naturally you cannot cover such a big subject in a short lecture. Those needing more information might want to look at "Tidy Modeling with r" by Kuhn and Silge(2022). A free ebook version is available online.
@PositPBC
@PositPBC 4 ай бұрын
Really nice talk. Thank you for pioneering this work!
@dexterpante
@dexterpante 4 ай бұрын
Great video tutorial, looking forward for more {Teal} Tutorial
@RinPharma
@RinPharma 4 ай бұрын
We hope to have more at R in Pharma 2024 October 29, 30, & 31st. Workshops will run the week before.
@300yardcarry
@300yardcarry 4 ай бұрын
cool!
@vinitakale8823
@vinitakale8823 5 ай бұрын
On running the following code snippet # Baseline Characteristics ---- adsl_bl <- pre_adsl %>% derive_vars_transposed( select(vs, USUBJID, VSTESTCD, VSSTRESN, VSBLFL), # Dataset to transpose and merge onto by_vars = vars(USUBJID), # Merge keys key = VSTESTCD, # Names of transposed variables value = VSSTRESN, # Values of transposed variables filter = VSTESTCD %in% c("HEIGHT", "WEIGHT") & VSBLFL == "Y" # Restrict records to just height and weight ) %>% # Do some cleanup rename(HEIGHTBL = HEIGHT, WEIGHTBL = WEIGHT) %>% select(-VSBLFL) %>% mutate(BMIBL = compute_bmi(HEIGHTBL, WEIGHTBL)) I am getting the following error. Error in `assert_list_of()`: ! Each element of `arg` must be an object of class/type 'symbol' but the following are not: ✖ Element 1 is an object of class 'quosure' --- Backtrace: ▆ 1. ├─pre_adsl %>% ... 2. └─admiral::derive_vars_transposed(...) 3. └─admiraldev::assert_vars(by_vars) 4. └─admiraldev::assert_list_of(arg, "symbol", named = expect_names, optional = optional) Run rlang::last_trace(drop = FALSE) to see 1 hidden frame. Can you please guide?
@carvalhoribeiro
@carvalhoribeiro 5 ай бұрын
Great presentation. Thanks for sharing this.
@siriyaksiriyak6067
@siriyaksiriyak6067 6 ай бұрын
good refresher, 😇
@ivorycloudofficial
@ivorycloudofficial 7 ай бұрын
Can you add timestamps/sections to your video please?
@haraldurkarlsson1147
@haraldurkarlsson1147 7 ай бұрын
This is excellent! I like the level of depth.
@RinPharma
@RinPharma 4 ай бұрын
Great to hear! We hope to have more at R in Pharma 2024 October 29, 30, & 31st. Workshops will run the week before.
@abuyasinsabdahany3259
@abuyasinsabdahany3259 7 ай бұрын
Thank you
@fburton8
@fburton8 8 ай бұрын
Great demo, so informative! You explained Observable Plots really well.
@divanaristoburger8295
@divanaristoburger8295 8 ай бұрын
This is amazing work!!
@gypcasinoable
@gypcasinoable 8 ай бұрын
The reports are just amazing. Thank you for sharing!
@meredith0322
@meredith0322 9 ай бұрын
I'm able to install ggsurvfit package, but cannot library it. any suggestions for the issue?
@RinPharma
@RinPharma 7 ай бұрын
Hi @meredith0322 - you might ask the question here: github.com/pharmaverse/ggsurvfit/issues
@user-vb1ck9yq3y
@user-vb1ck9yq3y 9 ай бұрын
This is outstanding presentation, I find it very useful. Thank you Daniel! Wojtek. W.
@fburton8
@fburton8 9 ай бұрын
Nice one!
@i.meijer-samson3466
@i.meijer-samson3466 10 ай бұрын
💡
@DieuwkeHettinga
@DieuwkeHettinga 10 ай бұрын
🎉 wat een goede presentatie
@mikebartlett6356
@mikebartlett6356 10 ай бұрын
In 1997 CDISC was formed to harmonise data standards across the industry and there were just as many nay-sayers for that initiative. Their work continues and admiral's is just beginning by comparison. admiral has the potential to make a similar impact on the industry.
@newbestofthis4422
@newbestofthis4422 10 ай бұрын
Thank you! I signed up for this course when it first came out and Ilove it. I look forward to taking your new course. As a biostatistician in public health I was desperate to learn pharmaceuticals workflow and their reporting system, there isn't enough resources unfortunately especially for R.
@RinPharma
@RinPharma 10 ай бұрын
Connect with Michael on LinkedIn, if you’d like to continue the discussion after r/pharma: www.linkedin.com/in/michaelrimler/
@RinPharma
@RinPharma 10 ай бұрын
Project GitHub: github.com/phuse-org/OSTCDA Join the Discussions and leave your perspectives, opinions, links, references, presentations, to help us cultivate a comprehensive digest of the current state of the industry using OS tech for clinical data analytics and reporting
@RinPharma
@RinPharma 10 ай бұрын
Great talk!
@tataphani
@tataphani 10 ай бұрын
Wonderful presentation
@ayushgupta7731
@ayushgupta7731 10 ай бұрын
Amazing
@mayank7jan
@mayank7jan 10 ай бұрын
Thank you 🙏🏻
@RinPharma
@RinPharma 10 ай бұрын
github.com/agstn/RPharma23
@abhilashbhagat2949
@abhilashbhagat2949 Жыл бұрын
Lovely explanation John!
@PotatoesPlease31
@PotatoesPlease31 Жыл бұрын
3rd Module starts at 1:14:20 4th Module starts at 1:31:05 5th 1:42:12 6th 2:11:54
@nndegwa1
@nndegwa1 Жыл бұрын
love it!
@chughag
@chughag Жыл бұрын
Thank you Micheal, Atorus Research and R in Pharma for conducting this workshop and posting it online!! This is super helpful!!
@denizgoktas1535
@denizgoktas1535 Жыл бұрын
Thanks for this instructive and worable presentation.
@joycesposato5905
@joycesposato5905 Жыл бұрын
5:23
@Ruben-un1mr
@Ruben-un1mr Жыл бұрын
'Promosm' 🙈
@explore5709
@explore5709 Жыл бұрын
This video puts the mind of SAS Programmer at ease to some extent, that creating a Dataset in R is not that Hard. But at the end of the video it does feel what's will be the future of Clinical Programming ?
@nancyanderson5413
@nancyanderson5413 Жыл бұрын
Creating dataset is not hard at all in R, and SAS is so expensive, and all the certifications are extremely expensive too. R is a community of scientist, data scientist, and programmers that want people to really learn and understand. Also once you talk with a SAS representative and dig deeper they take a lot of the innovations of the R GNU community. The regular user of SAS does not realized that but the programmers do, and it is awful that a company make a lot of money taking what in reality is open source.
@fburton8
@fburton8 Жыл бұрын
The first link in the dooblydoo is the talk slides.
@PasqualeMerella
@PasqualeMerella Жыл бұрын
Thanks for the video. May I got a github source code of that app in R? thanks so much