DICOM Simplified - Python Course
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Жыл бұрын
CNNs or ViT for Medical Imaging?
11:42
3D Mesh Cutting with Python & Vedo
10:18
Dicom Anonymization Using Python
10:18
Пікірлер
@yasirali8409
@yasirali8409 7 күн бұрын
legend ❤
@GÜRBÜZAKÇAY-o2t
@GÜRBÜZAKÇAY-o2t 8 күн бұрын
Hi Guru. How can find medical image segment dataset to add my AI educated model?
@pycad
@pycad 5 күн бұрын
Hello, There are several sources for datasets, you can find some interesting ones here: zenodo.org/records/6802614 and here: medicaldecathlon.com/
@GÜRBÜZAKÇAY-o2t
@GÜRBÜZAKÇAY-o2t 5 күн бұрын
@@pycad Thank you so much.
@derekwang5982
@derekwang5982 28 күн бұрын
Great tutorial. Thank you.
@Jkjk-pu2vt
@Jkjk-pu2vt Ай бұрын
i think i found heaven
@daniell9062
@daniell9062 Ай бұрын
Thoughts on PyVista?
@pycad
@pycad Ай бұрын
Not bad!
@AbuzarbhuttaG
@AbuzarbhuttaG Ай бұрын
Github link of this code please!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
@moncefhamiani9658
@moncefhamiani9658 Ай бұрын
انا فخور بك ولد بلادي ، انا طالب هندسة بيوطبية حاليا ، عندي مشروع التخرج سرطان التدي ، اتمنى ان اجد فرصة للتواصل معك لأنه عندي بعض الاسئلة حول هدا الموضوع ، و شكرا
@pycad
@pycad Ай бұрын
شكرا أخي، يمكنك بعث الأسئلة هنا: [email protected]
@emilycharn1036
@emilycharn1036 Ай бұрын
Can I use the same monai method from 05:07:32 to change the intensity scale in mammographies? I am trying go use cbis-ddsm for breast lesion classification, but getting poor results no matter the pre trained model chosen. I was wondering if windowing before cropping the images would give me better results. Thank you for the video! Wish I had seen it before.
@redavenskauskaite440
@redavenskauskaite440 Ай бұрын
Is there a way to convert a nifti file with multiple labeled masks into dicom-rtstruct ?
@kasperstarzec7724
@kasperstarzec7724 Ай бұрын
Hi there! Thank you so much for the video! Its exactly what i needed! I was wondering whether it would be possible for you to upload the abdomen stl from the beginning of the video. Its exactly ahat i need for my project and i cant find anything similar! Thanks in advance! 0:11
@pycad
@pycad Ай бұрын
Hello Glad that it helps! I didn’t understand your question, can you please give me some details !
@kasperstarzec7724
@kasperstarzec7724 Ай бұрын
Thanks for your response. At the beginning of the video, you are showing 2 different rotating models in the introduction. The first one is a green 3d image and the second is a 3d image of a human torso with the ribs and hip bones. I was wondering if it would be possible for you to direct me where I could download the 3d file of the human ribcage and hip bone image. Thank you! @pycad
@pycad
@pycad Ай бұрын
Actually that was a CT scan from the Decathlon dataset!
@ezhil182020
@ezhil182020 Ай бұрын
Can you please share the dataset you have used in this video for the viewers to practice along as you code ?
@pycad
@pycad Ай бұрын
Please find the whole dataset here: medicaldecathlon.com/
@iNTERnazionaleNotizia589
@iNTERnazionaleNotizia589 Ай бұрын
Salaam Mohammed, I don't know if you've come across this in your medical imaging journey: Do you know any (the name) of Dataset for Coronary Artery Disease segmentation? Especially for calculating/predicting the Coronary Artery Calcium (CAC) Scoring? Edit: for CT Image modality of Heart
@pycad
@pycad Ай бұрын
Salem, Unfortunately, I didn’t see this kind of dataset for the moment!
@karthis5375
@karthis5375 Ай бұрын
Can anyone tell me how to download the image files
@pycad
@pycad Ай бұрын
Please find the whole dataset here: medicaldecathlon.com/
@uniqueramya3632
@uniqueramya3632 Ай бұрын
Thanks for the informative session. I am unable to find your free eBook. Please can you share the link for the same? in the pycad website it just shows some topics but ebook is not visible.
@pycad
@pycad Ай бұрын
Please find the ebook at this link: www.dropbox.com/scl/fi/8b2don385sndu7dujrwkc/Medical_Imaging_Ebook_Beginners_Guide.pdf?rlkey=ccjo4aa100beyaobvjjjiwllq&st=l2gtkfjb&dl=0
@dr.mahavirsovitkar396
@dr.mahavirsovitkar396 Ай бұрын
Cant able to download from above links click here option
@pycad
@pycad Ай бұрын
Please download the ebook from here: www.dropbox.com/scl/fi/8b2don385sndu7dujrwkc/Medical_Imaging_Ebook_Beginners_Guide.pdf?rlkey=ccjo4aa100beyaobvjjjiwllq&st=l2gtkfjb&dl=0
@pycad
@pycad Ай бұрын
Please download the ebook from here: www.dropbox.com/scl/fi/8b2don385sndu7dujrwkc/Medical_Imaging_Ebook_Beginners_Guide.pdf?rlkey=ccjo4aa100beyaobvjjjiwllq&st=l2gtkfjb&dl=0
@GamerPro-qs1py
@GamerPro-qs1py Ай бұрын
How to get the output?
@pycad
@pycad Ай бұрын
What output ?
@zozozainab4909
@zozozainab4909 2 ай бұрын
‏hi, how can convert csv dataset file to nifti
@gamedeviitian3645
@gamedeviitian3645 2 ай бұрын
Please give code to run with gpu
@InfotainmentAsh
@InfotainmentAsh 2 ай бұрын
Aslam o Alaikum I am PhD Computer Science student having some trouble with finding problem out of Literature Review! How can I contact you?
@samuelarturotorresorozco1471
@samuelarturotorresorozco1471 2 ай бұрын
Hello! Thanks for the tutorial Someone knows where can I find the slice.dcm file?
@MuhammadMaab-os1gu
@MuhammadMaab-os1gu 2 ай бұрын
can we get the stl viewer download link
@pycad
@pycad 2 ай бұрын
Hey, all the three demos code can be found here: github.com/amine0110/spine-segmentation-nnunet/tree/main/demos
@tiempoveganoprovida2247
@tiempoveganoprovida2247 2 ай бұрын
Sirve para una frecuencia fija o se puede variar la frecuencia de entrada ???
@Neerajkumar-du8ek
@Neerajkumar-du8ek 2 ай бұрын
Sir, I tried multiple dicom images, but every time matrix of dicom_array all the elements i found is zero, why. in your video there is always some values. In spite of this when I run the program Image appear. Please guide me in this.
@El_Remolino19
@El_Remolino19 3 ай бұрын
can you paste an image into a dicom image? I am trying to put a qr code into the dicom image, and thought i could simply do it by manipulating the pixel data. Even after converting the qr to the corrrect byte type and color space, i get some werid results
@dougwilson1393
@dougwilson1393 3 ай бұрын
Using vtk 9, works great. Thanks so much.
@MackintoshOlive-k7w
@MackintoshOlive-k7w 3 ай бұрын
Bergnaum Roads
@EduardoPonce-y4p
@EduardoPonce-y4p 3 ай бұрын
Altenwerth Rue
@KittoMyra-x8u
@KittoMyra-x8u 3 ай бұрын
Kihn Spurs
@RachelBryant-x5z
@RachelBryant-x5z 3 ай бұрын
Douglas Tunnel
@vikkibinnar8615
@vikkibinnar8615 3 ай бұрын
Good job brother😊
@El_Remolino19
@El_Remolino19 3 ай бұрын
how would you add a qr code or image to a dicom image/file? i want to put one in the right hand corner and have it work
@El_Remolino19
@El_Remolino19 3 ай бұрын
how would you add a qr code or image to a dicom image/file? i want to put one in the right hand corner and have it work
@LauraThomas-i3o
@LauraThomas-i3o 3 ай бұрын
Clark William Wilson Jeffrey Thompson Jason
@HaggaiAsa-y2l
@HaggaiAsa-y2l 3 ай бұрын
Block Point
@DavidLewis-g3e
@DavidLewis-g3e 3 ай бұрын
Toy Heights
@BroadMirabelle-t1h
@BroadMirabelle-t1h 3 ай бұрын
Wilderman Forges
@zgscns-e4x
@zgscns-e4x 3 ай бұрын
Kuvalis Crossroad
@GwynethClinkingbeard-n3e
@GwynethClinkingbeard-n3e 3 ай бұрын
Landen Harbors
@ZOBAER496
@ZOBAER496 3 ай бұрын
Which software do you recommend for dicom to nifti conversion? Or do you recommend writing custom Python code to do that?
@pycad
@pycad 3 ай бұрын
Actually both ways work, here are the two resources that we have: 1. In 3D Slicer: kzbin.info/www/bejne/g2bFYaxsh51jl5Isi=zCP73mPYO2E1fhfy 2. By code: pycad.co/how-to-convert-a-dicom-series-into-one-nifti-file-python/
@GeorgeKowalski
@GeorgeKowalski 3 ай бұрын
course is gone , did it move elsewhere ?
@pycad
@pycad 3 ай бұрын
Hey, the course is available in KZbin: kzbin.info/www/bejne/hF6WXnSFippnr6csi=FNfxT2XnN4QovL8G
@rafulsanchezm
@rafulsanchezm 3 ай бұрын
Bro, I am starting my master degree in AI, in Mexico, I am very interested in the Image Processing application using Python. Is there any course that you sell, to learn more about this topic?
@pycad
@pycad 3 ай бұрын
Unfortunetely we don't courses about this specific topic, all our resources are in the KZbin channel or in our blogs: pycad.co/blog/
@gabriellopez812
@gabriellopez812 4 ай бұрын
Gracias! Nice explanation!
@HasanŞEN-k2b
@HasanŞEN-k2b 4 ай бұрын
Hello, at first thank you for this course. I couldn't find slice.dcm file in this video. Can we access the dataset in this course?
@chih-yunlotmu4669
@chih-yunlotmu4669 4 ай бұрын
Thank you for this course, it will help me a lot !
@rafulsanchezm
@rafulsanchezm 4 ай бұрын
Great work bro!! Do you know the easiest way to convert from .nii.gz to .nii for image processing? Anothers question is if you have any full course about this?
@pycad
@pycad 4 ай бұрын
Actually .nii.gz is just a compressed version of the .nii format! It is a gzip compression. There are several ways of decompressing, either you use the gzip library or you load the nifti using nibabel oe simpleitk and then you export it again without giving .gz if the output filename. I hope that this helps
@rafulsanchezm
@rafulsanchezm 3 ай бұрын
@@pycad Thank you
@YoavNadu
@YoavNadu 4 ай бұрын
thanks!
@DeepuThomas-n9v
@DeepuThomas-n9v 4 ай бұрын
Do you know how to read the measurements taken by Doctor which is shown on the Dicom image? These values seems to be part of the image and not stored in any of the Attrib values in the Dicom file(unlike values like patient name etc).
@setayeshk1062
@setayeshk1062 4 ай бұрын
your video and code are mostly the same as kzbin.info/www/bejne/g2S9iJmXoryleK8
@maabkhattak8400
@maabkhattak8400 5 ай бұрын
I used this process for brain tumor .I used the exact same process and got in_channels=4..i have train volume dimensions=(1,4,128,128,155) Test volume dimensions=(1,4,128,128,155) train label dimensions=(1,1,128,128,155) Test label dimensions=(1,1,128,128,155) I got error:error using forward pass.size of tensor must be match except in dimension 1.expected size 39 but got size 40 for tensor number 1 in the list
@MuhammadMaab-os1gu
@MuhammadMaab-os1gu 5 ай бұрын
Very good explanation.