Thomas Cynthia Garcia Barbara Miller Anna

Maam I am getting problem at last when I reach at last step in command prompt it is written in error could not open "protien.pdbqt" for docking

Excellent explanation mam

😍😍

I had been trying to run docking but there was always some problem, that i couldn't get my results. Thanks to you i finally got my results. much love and thanks🥰

Can I made nanodomains sturcture this software.

Is pyrx used to analyse protein protein interaction

Hi mam.., .dock.dpf file was not open,why this problem arise

Split_exe not working shows the it is not recognised as an internal or external command

Thankyou, helped a lot, I need for metal- organic ligand docking, kindly provide a video about it

Hi, the Drive file isn't there kindly update on the issue

How to Zoom the ligand??

Thanks mam I was able to do the docking with this video thanks a lot mam

I got the results of docking, but the problem is that I don't know how to explain the results in my paper

what should i do if Parse error on line 1474 in file "CREB5_pdbqt.pdbqt": Unknown or inappropriate tag please help I stuck with it

Am not able to get the 2d and 3d interaction diagram in the last step pls explain

When i do select grid ~ macromolecule ~choose~select protien then show a different interface like as error please help

U are just awesome

Excellent!!!!!

So, how do you save these files in pdbqt format for molecular dynamics

We use molegro molecular viewer to remove water molecules...

I am here 2024,this is great. Please continue posting 😊

Hbb gene docking 147***gpcrs 7*❤ honey 👌🧬 biological treatment

If i have a peptide ligand with 20 amino acids would it work??

Hi, thankS fro the video but why did you delete the chain B?

Without thimble how can work perfectly

I'm facing an error while converting pdb to pdbqt

Nice

Thanks so much . How can i enter my center for grid box?

Please make video on pharamacosphere analysis using ligand and receptor

How to find out ligand?

Thank you so much for making this video I am watching it after 3 years and it is very helpful for me

This is the best video have ever seen about docking

Your videos are very good. I am getting error of bad window path name when I run autodock..what to do

This is the best video I have ever seen about docking

Mam i am facing (list:remove(x): x not in list) can u please tell what is the problem 🙏🏼

I am facing problem in preparation of macromolecule.

Hi! When I select minimize all then it shows the abort function could you help me out with this?

why did you choose ligand 1 instead of ligand 2 as the docking site?

Thank you so much this was best one so far for vina. ❤

It's really nice one... But as a beginner one question, are research articles accepted with good impact factor using pyrx

Thank you for this video🙌

I've been following the same steps. However, after docking, my results are coming in positive... which is wrong .. what should i do ?

Thanks ❤

Ligand is not bound/interact with protein? What is that?

Thank you so much for this video tutorial ....🤩🤗

Can u please tell me how we visualize whole ligand with protein structure actually my result showing result in parts I want whole

Thank you for the tutorial. I am not able to generate the protein.SA map which is why my docking run is not getting completed. Please tell me how to solve it. P.S. gpf file has the SA as receptor type and successfully completed forming .glg file.

thank you very much ♥ , i support you ♥ , please can you realize a video for " how to dock an " organometallic" with protein ? " thank you again

you have deleted one chain from your protein. i have many chains in my protein how i will know which protein should be removed?