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@zohaibatif4008 2 күн бұрын
Thank you for your lecture. but i have a question you did not give any values I mean numeric that correlates the strength of connection of these nodes with each other then how can we predict that top ten nodes are these. i think this is not fair to do network without giving only nodes in formation and skipping the strength of these connections. please comment . thank you again
@Bioinformatics_Made_Easy 2 күн бұрын
@@zohaibatif4008 To find hub nodes, you generally do not need numerical correlation directly. The centrality measures (degree, betweenness, closeness, etc.) depend on the structure of the network (connections between nodes), not the numerical correlations between node attributes. Numerical correlation may be useful for building or weighting the network (e.g., in gene co-expression networks), but the hub nodes are identified through network centrality, which focuses on the topological importance of nodes in the network. The CytoHubba tool in Cytoscape is used to rank nodes in a network based on their centrality or importance according to different algorithms (e.g., degree, betweenness, closeness, etc.). When CytoHubba generates a node ranking, the output is often saved as a CSV file.
@lubnasaeedsaeed8686 22 күн бұрын
Super explanation❤
@lubnasaeedsaeed8686 22 күн бұрын
Useful video
@lubnasaeedsaeed8686 22 күн бұрын
This is very informative video
@lubnasaeedsaeed8686 24 күн бұрын
Very useful video beginners❤
@lubnasaeedsaeed8686 Ай бұрын
❤❤
@johirislam8174 Ай бұрын
I tried to analyse my PPI network with bingo. But when i opened it in cytoscape, I could not extend it. The start button is below my laptop task bar. I tried to uphold that but couldnot. How can I solve that problem.
@Bioinformatics_Made_Easy Ай бұрын
Kindly use the String database string-db.org/ to analyze the PPI network.
@অশ্বডিম্ব-প৯ঢ Ай бұрын
mam please make a video on clustering 🙏
@Bioinformatics_Made_Easy Ай бұрын
Sure
@Sjjeien Ай бұрын
Could you build a playlist in your youtube channel and group vedios?... It would be really conveniant
@Bioinformatics_Made_Easy Ай бұрын
Sure
@vanyajayaraj3320 Ай бұрын
awesome tutorial, pls share the link of result interpretation tutorial
@islamicmotivational_1786 Ай бұрын
Thank you for this video 😀
@lubnasaeedsaeed8686 2 ай бұрын
I really need this video, thank you ma'am❤
@RajashreeRJK 2 ай бұрын
Really helpful💯
@RajashreeRJK 2 ай бұрын
Perfectly explained😍 Steps for protein preparation 1. Select the protein of Interest 2. Load molecule in Vina tool 3. EDIT - delete water 4. Add Hydrogens - add polar hydrogens 5. Charges - add Kollman charges *python shell pops up* 6. Save file in *pdbt format.
@Bioinformatics_Made_Easy 2 ай бұрын
Yes, correct
@IshaJameel-k9w 2 ай бұрын
Can we download 80 files in one command ?
@Bioinformatics_Made_Easy 2 ай бұрын
Yes
@RajashreeRJK 3 ай бұрын
😍 I'm just waiting for my new laptop.. nd I'll try it out for sure.. so nicely explained..🥰🙏🏻🙌🏻so helpful
@jasmeenchawla4112 3 ай бұрын
What courses are available
@Bioinformatics_Made_Easy 2 ай бұрын
For more visit futureomics.wixsite.com/home also AI/ML
@Bioinformatics_Made_Easy 3 ай бұрын
scholar.google.co.in/citations?view_op=top_venues&hl=en&vq=bio_bioinformatics
@hemantkardel6243 3 ай бұрын
Where I can find this journal???
@Bioinformatics_Made_Easy 2 ай бұрын
kzbin.info/www/bejne/ipbPhnt4adSbi6ssi=4G-BBokdR3seYqCA
@Ram_1512 4 ай бұрын
Hi mam are you teaching introductions of bioinformatics by Arthur lesk book or different book mam
@Bioinformatics_Made_Easy 2 ай бұрын
Many reference books
@lubnasaeedsaeed8686 4 ай бұрын
Thank you ma'am for this video
@islamicmotivational_1786 4 ай бұрын
Thanks nice explanation😀
@Bioinformatics_Made_Easy 2 ай бұрын
Thanks!
@_thowfeek_5919 4 ай бұрын
How to apply
@Bioinformatics_Made_Easy 4 ай бұрын
Visit the websites of provide list of universities/colleges in the description
@Drunken.Seagull 5 ай бұрын
Quick overview: 1. Genome assembly and annotation 2.Metagenomics analysis for microbiome studies 3.Drug discovery through computational methods 4.Protein structure predictions and modelling 5.Phylogenetic studies for evolutionary studies.
@Bioinformatics_Made_Easy 2 ай бұрын
Yes
@ofosuhemaajoyce9478 5 ай бұрын
Please is there a way to go export the results
@Bioinformatics_Made_Easy 5 ай бұрын
It is shown in the video itself there is "Export results" option available.
@poonamchaudhary282 6 ай бұрын
Can we search list of smiles in single search if not then what tool can i use?
@Bioinformatics_Made_Easy 6 ай бұрын
Yes you can provide list of smiles
@GS-bl3og 7 ай бұрын
Great! Hope to see Bioinformatics blooming in the near future with more advancements in Healthcare saving patient lives and improving human life
@Bioinformatics_Made_Easy 2 ай бұрын
@Bioinformatics_Made_Easy
@akanksharout5366 10 ай бұрын
HELLO MAM, great video. But towards the end maybe you saved the file accidentally as pdbq and not pdbqt format. One more dilemma im still facing is mam before directly incorporating the protein do i need to check the missing residues and how to go through the process of proper protein preparation. Kindly help. Thankyou, your sincere follower.
@Bioinformatics_Made_Easy 10 ай бұрын
Yes its write, you have to save in .pdbqt and you can check the protein of residues information. All the best Thanks
@akanksharout5366 10 ай бұрын
Felt really grateful by your response. Thank you@@Bioinformatics_Made_Easy
@amitkumardash2008 11 ай бұрын
Ma'am I missed your yesterday class. And I installed latest version of R 4.3.2 should I continue with this Dear ma'am?
@Bioinformatics_Made_Easy 11 ай бұрын
yes
@amitkumardash2008 11 ай бұрын
thank you ma'am for this video!
@Bioinformatics_Made_Easy 2 ай бұрын
Thanks
@amitkumardash2008 11 ай бұрын
Nice explanation ma'am!
@Bioinformatics_Made_Easy 2 ай бұрын
Thanks
@amitkumardash2008 11 ай бұрын
Nice explanation ma'am!
@Bioinformatics_Made_Easy 2 ай бұрын
Thanks
@Lamothe.Bioinformatics-gj6xn Жыл бұрын
when it says 'pdflatex is not available', how do you reconcile that?
@amitkumardash2008 Жыл бұрын
Thank you so much ma'am for this informative video!
@amitkumardash2008 Жыл бұрын
👌Thank you ma'am for sharing this information!
@amitkumardash2008 Жыл бұрын
Ma'am, wow😲👌👌👌
@MahjabeenShaikh-l5b Жыл бұрын
Very nice video
@ajkenlylazarte2009 Ай бұрын
hell yeah
@amitkumardash2008 Жыл бұрын
Thank you so much ma'am!
@BONGAIDEBORAHMABEZA Жыл бұрын
how do you download the docking file in pdbqt format
@Bioinformatics_Made_Easy Жыл бұрын
We have to convert pdb to pdbqt format refer to my vedio @OpenBable kzbin.info/www/bejne/kJXEoo17o9CCe5Ysi=zelUxODlOANWN46s
@amitkumardash2008 Жыл бұрын
Thank you so much ma'am!
@amitkumardash2008 Жыл бұрын
Nice ma'am! This will protect innocent animals being killed na ma'am?
@aragon5956 Жыл бұрын
how it cost ?
@Bioinformatics_Made_Easy 2 ай бұрын
Online databases are available
@amitkumardash2008 Жыл бұрын
Ma'am, is this Disease X may be a future pandemic is AI based ?
@Bioinformatics_Made_Easy 2 ай бұрын
Yes
@amitkumardash2008 Жыл бұрын
Thank you so much ma'am for providing this information!
@amitkumardash2008 Жыл бұрын
Thank you so much ma'am!
@amitkumardash2008 Жыл бұрын
👌Ma'am
@ayushpundhir3838 Жыл бұрын
Remember me when you famous ok keep on going