Sir one request : plz suggest some list of good laptops for doing molecular docking project!!!🙏🏻🙏🏻🙏🏻
@prakashj71997 күн бұрын
If you are a long time Linux/*nix user, you may backport latest gromacs from Debian Sid repository and rebuild it from the sources.
@SURAALZUBAIDI-c5i10 күн бұрын
the music in the background of the video so annoying , id appracite to you is you make it without music so we can foucs on the explination well
@duafatima628321 күн бұрын
Hi, why did you predict the transmembrane region?what is it's importance?
@kshitijmohan698724 күн бұрын
If you don't have coding experience or a powerful computer, you can use QuandleLabs to use all of the above tools completely online
@purushottamnitwarangal926329 күн бұрын
Autogrid is not running and glg file is also not generated any solution. please help
@user-pw3ng2nu9uАй бұрын
Dear sir can you please teach me separately in Google meet for downloading the structure of protein protein interaction??
@tanveerhasan09Ай бұрын
Nice
@kelvinlu2111Ай бұрын
Excuse, i want to ask if i am not working on gene cloning; rather, I am conducting gene expression experiments. How can I avoid incomplete gene amplification when designing primers?
@sehrishkakakhel3643Ай бұрын
Can we run in Intel gpu
@Manohar.S.Naik.R-Biology.Ай бұрын
Good morning sir, I am Manohar Naik your Junior in sku from Kadiri sir , I have a doubt how can I contact you sir I have no number sir
@wasifullahdawar6962Ай бұрын
Sir g You are the only one who not work for only to get views but to help someone
@Howling-wolf.2 ай бұрын
great sir thank you, the links in the description are more precious
@lifesciencedecoded2 ай бұрын
Sir which software is used to predict the anti-cancer compound ?
@MashiDani2 ай бұрын
3h42 and 3m0c are in complex. did you seprate them before?
@MashiDani2 ай бұрын
why did you use hex when it was non validated
@rosmintreesamathew38432 ай бұрын
Sir , what if the ligand is not inserted to the protein
@70pradeepyadav52 ай бұрын
After this step, how to get 2D interactions?
@Mahimaamrate20002 ай бұрын
I'm getting an error during running autogrid4, it's not running.
@Mahimaamrate20002 ай бұрын
From where autogrid4 comes, I'm confused
@karimbarakat36812 ай бұрын
Great video, Thanks alot and this the best lecture in docking that i have ever seen. but my question: What is the purpose of the step taken @9:10, changing the histidine hydrogens? why not +1? and why you didnt apply force field for the compounds?
@phdstudentsviews36672 ай бұрын
Can you please tell me how to run gromacs in could Google colab platform
@souvikmitra43572 ай бұрын
The best video on KZbin... thank you very much sir
@user-fh4bw7kr8z2 ай бұрын
Please share videos on network pharmacology, QASR and DFT for drug discovery
@cristianpalacio80753 ай бұрын
Fucking hindu your video and social media is a bullshit, and your teaching is boring and deficint
@DanielLopez-uf7dw3 ай бұрын
You just saved my undergraduate thesis research. Thank you so much!!
@rohitchel56793 ай бұрын
Im performing docking on a known active site so i limited the gridbox around the active site only. Some of the conformations i got after docking were outside the grid box. Is that normal?
@camilla5323 ай бұрын
Thank you so much for this helpful tutorial! I am having an issue if I can ask. When I run the command, the cmd says that access is denied.
@manojsah65093 ай бұрын
Hi, sir , this video is very helpful to understand molecular docking with binding active site. My question is "How to know active binding site of any other protein for good result of molecular docking?????"
@labonihalder10033 ай бұрын
Thanks
@biomedicalscientistmuhammad3 ай бұрын
Exellent ❤
@nasirofficials3 ай бұрын
Thank you professor, I want linearized vector it has 7000 basepair. I tried restrictions enzyme, but I can't find valid enzyme.so I want to make primer. Please guide me. I also tried to make primers but I can't fullfil the condition of tm, gc and no of basepair. How can I do.
@marwanbahaj49743 ай бұрын
sir when i want to save the GPF then i get error and shows that you must select macromolecule before writing gpf
@MARIALUIZAPEREIRABALTAZAR3 ай бұрын
This was SO MUCH helpful!! Thank you for the amazing explanation!
@uselessminority60714 ай бұрын
this video is a waste of time, dont even bother with it. theres thousands of better options out there
@Manohar.S.Naik.R-Biology.4 ай бұрын
Sir Good evening sir I'm Manohar Naik from Kadiri ,your junior in SKU I have a doubt sir
@nguyenthaihoa32974 ай бұрын
When I read a paper about andrographolide as a potential inhibitor of SARS-CoV-2 main protease: an in silico approach. The andrographolide compound has a free energy of -3.09 Kcal/mol, but it shows great binding when compared to other compounds having more negative free energy values. I think about pressure, temperature, and pH in the body affecting the inhibitory process
@iJoseph9033 ай бұрын
Indeed, this variable influences the inhibitory process; it is advisable to do molecular dynamics calculations to complete the molecular docking calculations.
@sibtulhassanshah29904 ай бұрын
Make a clear cut video of cuda installation with gromacs why you skip that portion?
@SEEMAUNNIKRISHNAN-mw9rt4 ай бұрын
if its 430000 subcultures are there how to download it in sdf.
@saurabhmishra65814 ай бұрын
please tell me
@saurabhmishra65814 ай бұрын
hlo for link it showing does not exist where i get it
@chaserheinlander3564 ай бұрын
Why is my ligand so far away from the protein??? I know the active site of the protein
@iJoseph9033 ай бұрын
When docking, the ligand will automatically be located in the center of the box.
@user-vj8pw4tq9o4 ай бұрын
why can't I save the final complex in hex docking
@hamoudiasma66474 ай бұрын
Please I have humain gene (hla) how i do primer design
@ruchibaliyan75384 ай бұрын
I am getting an error while adding polar hydrogen only. The error is could not find atomic no. For A A. Could you please help me. And ease provide your email id if possible. Thank you
@rumudas72994 ай бұрын
Hello sir , after the splitting command , my compounds doesn’t appear in seperate folder. What should be done now ? Please help me
@user-bd4df6gm4f4 ай бұрын
hi, i have a question, i have nitrogen and carbon genes, then i want to check relation with different mine treatments, but you did not add any values of genes, becuase my results have values of every gene in every treatment
@swarnadabral4 ай бұрын
Sir, my laptop has 16 gb RAM and 1 Tb ssd. I've removed hard drive to put ssd. Can install linux and gromacs and run md simulation with these system requirements?
@emilijaskrodenyte83415 ай бұрын
Hello, my input into Open Babel GUI was SDF file of N4-benzoyldeoxycytidine and when I want to convert it into pdbqt file, it says that 0 molecules were converted. Can you help to understand what is wrong? Thank you sir