Thank you for turorial! It was very useful

tks alot mr, such an educational tutorials, great work !!!

now there is no option of Qmean

Sir how to check root mean square deviation

Hello sir. Can Molecular Dynamics simulation be used to provide insights about the outcomes of CRISPR-Cas9 correction of a certain variant?

Thank you so much for your help, sir! You've explained things in a very straightforward manner. I'm curious to see what you've discovered? Any publications?

This has been highly informative so far, thanks for the refresher!

Thank you soo much

In msc biotechnology

Thank you so much sir for this informative and easy to understand tutorial for docking. I was alot confused before coming here and now I am very clear about the docking protocol.

Can we install in ubuntu.

How I get Alignment score😢

Was Mulder’s description published in 1828?

can you please guide about the creation of the config file? I was unable to understand

this video is really helpful !!

If I Have to compare canine and human protein with the same ligand, what i have to do?

i was not getting that how did you save this mdp file I tried lot but it was not working. yo didn't mention how to save mdp file 2:10

I heard a concept that the [+,+] & [-,-] phi-psi angle combination (i.e. same sign) results into a curvature of the peptide backbone conducive for helix formation. Whereas a combination of [+,-] or [-,+] phi-psi (i.e. opposite signs) cancels out the curvature thus conducive for beta sheet formation. Tell me whether you agree with this above statement. If yes, could you provide me with some credible reference to back it up? Please.

this video is a life saver thank you so much !!!

Dear Sanket sir we are very much thankful to you for preparing informative videos on molecular docking. We wanted to request you to make video on visualisation of the results of swissdock in discovery studio as earliest. Thanks and high regards,

Sir aapne vo box ur solvation dekhn ke liy kism open kiy hai please usk name bataye clearly nhi dikh rha video me

Hello I tried to analyse my PPI network with bingo. But when i opened it in cytoscape, I could not extend it. The start button is below my laptop task bar. I tried to uphold that but couldnot. How can I solve that problem.

What a disappointing video. To begin with, RCSB was never defined. And then, you never explained that from the Structure Summary window, you can click on the Structure link, which allows you to use your mouse to rotate the image and select a region to examine more closely. That will enlarge the image and show you the bonds linking the amino acids. If you hold your cursor above each of the bonds, without clicking, information will appear at the bottom right of the screen indicating what type of bond it is and which amino acids are involved in the bond information. But above all, you never explained just what the PDB is used for. What are biologists doing with all this information every day? Are they designing molecules to be used as structural inhibitors, which might have therapeutic implications? What else are they doing? Explain all these things, if you are claiming that this is a video for beginners. Start by explaining broad concepts and then illustrate those concepts with a bit of detail. That's what good teachers do.

Can you make a video about how to minimize energy please

Good

Why do you skip some steps like energy minimization of ligand and protein and charges added to ligand

great video content about docking

Sir how to get FDR in Cytoscape please guide us

I love this. It is so helpful and explanatory.

When i trying to plot graph it is showing can't open display failed initialisation GUI .

Sir how can we predict output

sir i dont have access to ligplot is there any other alternative?

Thank you sir.. this video was very helpfull

It says could not open "config.txt" for reading while clicking enter from (8:35). Please help

Sir what's the difference between UniProtkb, Uniref & UniParc???

Your tutoring really help but now I'm using ubunto and I'm stuck 😭

THANK YOU SO MUCH

Wonderful

Can I get the part 2 link please

i am unable to do the dockig. When I am adding to command prompt, it is showing access denied. How to resolve it?

how to download ligPlot? it shows that license is needed

Hello sir...when i took a drug molecule as ligand..i got warning tht exhaustiveness value is low..so i changed it to 16....and then got the result...will that be fine if i change the exhaustiveness value????

Thank you

Thank you.

Concept of ribbon and strands not explained

How to identical the sea domain located

If you don't have coding experience or a powerful computer, you can use QuandleLabs to run autodock vina

Sir can you make a video where a detailed description of network analysis is present. Or if you have already then please mention. It will be helpful for a beginner like me.