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@adventure4404 2 ай бұрын
Sir please can you post more videos related your work in english.
@playstation4nobplayer892 2 ай бұрын
Thank you for your video, and I really enjoy and successfully plotted the graph through the tutorial. Anyway, if I apply it to the real work, I would like to know how you calculated the aboundancy %?
@sunirmalsheet9544 3 ай бұрын
Thank you for your video. Could you tell the how to get the mean abundence percentage table?
@safiyayakubu2219 5 ай бұрын
Amazing video. Thank you for sharing. Please make more of these videos on microbiome analyses. e.g beta diversity, pcoa, NMDS, community heat map, serial group comparisons etc
@justicetresorngomngom6822 6 ай бұрын
Hi Thank you for your video, please i would like to know the metagenomic analysis tool that you used and why your OTU ID are coded because mine are long numeric number and i used QIIME2
@grazieleruas 7 ай бұрын
Gracias
@gamraoueslati6914 8 ай бұрын
Thank you for the video. I just would love to know who you imported the data, and if it should be tsv format? Thanks
@sur9362 8 ай бұрын
All the data and code is the github repo github.com/surh/scip_barplot The data is in tsv format so I used the read_tsv function of the readr package
@meseretmuche6984 8 ай бұрын
remarkable lecture Dear Dr, please share us if you have video lecture related to indicator species analysis in r
@user-dp7fj5qd1d 9 ай бұрын
Thank you for your teaching and sharing. It helps me a lot. Really appreciate.
@abimbolaenitan129 10 ай бұрын
How can I get the diversity based on this?
@rishikeshdash12 10 ай бұрын
Can you tell me which package can be used for prevalence calculation for Microbiome Data.
@gustavsloris 11 ай бұрын
amazing, thank you! combining all the metabarcoding data in one large table and visualizing with ggplot is much more handy to work with than phyloseq. best regards :)
@dianamamawal4664 11 ай бұрын
Hi what if i have 50 legends? Cannot do it with rcolorbrewer and rainbow color is not that presentable.
@cristianjaviermena6955 Жыл бұрын
Gracias por este video hermanoo!! no tiene abuela este cientifico!!!
@ginalaspada3521 Жыл бұрын
😃thank you
@sofiahernandezvivar6893 Жыл бұрын
Thank you so much for this video!! so clear
@amrsalaheldinabdallahhammo663 Жыл бұрын
How to plot the relative abundance of the most abundant genera (with a mean relative abundance > 1% in all samples? please
@TheSalinascrime Жыл бұрын
How were you able to obtain the mean abundance to be able to reorder the Phylum?
@sur9362 Жыл бұрын
There is more than one way to do it. You can see how I did it in the extended_example.Rmd file of the GitHub repo. Or go to this link github.com/surh/scip_barplot/blob/a775e0d97b47e8dd40498b6713016bbb7e045003/extended_example.Rmd#L285-L301
@user-zc6bv8ej9g 2 жыл бұрын
Thank for the vdo. Please keep this type of tutorial vdo coming.