Adding log-scaled tick marks to an axis with ggplot2 in R (CC325)

Pat recreates a figure published in mBio as a line plot with data using the geom_line and geom_errorbar functions from ggplot2 in R and composes them together using patchwork. Along the way he uses filter, summarize, geom_errorbar, geom_line, labs, scale_color_manual, scale_y_log10, guide_axis_logticks, coord_cartesian, and theme. You can find the code he developed in this episode at www.riffomonas.... The original paper is in an open access journal and can be found at journals.asm.o.... The newsletter describing how he would go about generating the figure can be found at shop.riffomona....
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0:00 Introduction
3:47 Generating basic line plot with error bars
6:13 Modifying appearance of legend and colors
11:57 Formatting the y-axis to be log scaled
19:44 Adding and formatting title for each plot
20:48 Create function to generate each subplot
23:05 Assembling panels with patchwork
24:58 Adjusting formatting of figure to match original
33:21 Adjusting width of error bar staple

[@lucasamoroso92]

Pat, i'm loving this series! Always learning something new 🙏 Thanks for that!

[@Riffomonas]

wonderful - thanks for watching! 🤓

[@pimaniye41]

This channel helped me with my first r package and ever since it is the most useful channel for me in R. Always explaining unique stuff that you wont find without a niche stackoverflow question :) Thanks for the videos

[@Riffomonas]

My pleasure - thanks so much for watching! 🤓

[@OlawaleQuadriOgunsola]

Nice video. Another way to get the variable names instead of using count is using "distinct" option.

[@Riffomonas]

thanks! for some reason, my go to is always count rather than distinct. not sure why 🤓

[@djangoworldwide7925]

Pat youre beautiful (❤️) but can you please reduce the size of your square? Or make the border blur? It hides parts of the code/ viz. As always, love how you implement styling and advanced features of ggplot to reproduce figures you found. It is so helpful and insightful

[@Riffomonas]

There's just not enough real estate on the screen :) I'm trying to get to a png quicker and toggle back and forth between that and the code