Amazon HealthOmics End to End Workshop - Presentation

Join us for an in-depth look at Amazon HealthOmics during our End-to-End Workshop. Ariella Sasson, Principal Solutions Architect at ‪@amazonwebservices‬ introduces one of AWS's newest services, Amazon HealthOmics, supported by Itzik Paz and Sumit Deshpande of AWS, and Aaron Jeskey of PTP. Hosted by Gary Derheim of PTP, this workshop explores the powerful capabilities of HealthOmics and its impact on healthcare and life sciences.
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Introduction and Overview 🌟
0:00 - 1:00
Ariella Sasson introduces Amazon HealthOmics, initially launched as Amazon Omics and later renamed in July 2023.
Discusses the motivation behind the service, driven by customer needs for managing genomic and biological data efficiently.
HealthOmics Storage 📦
1:01 - 6:30
HealthOmics Storage offers compliant storage for bioinformatics file types like FASTQ, BAM, and CRAM.
Allows petabytes of data to be stored at low cost, with a focus on efficiency and accessibility.
Data is stored as immutable objects with unique identifiers, supporting strict data provenance and lineage.
Archive storage class automatically moves data not accessed in 30 days, with reactivation possible via API call.
HealthOmics Workflows 🛠️
6:31 - 18:00
Omics Workflows help run bioinformatics analyses at scale using Whittle, Nextflow, and CWL.
Supports OCI-compliant containerized tooling stored in private registries in Amazon ECR.
Ensures predictable costs per workflow without surprises, providing transparency in resource usage.
Ready-to-run workflows are pre-built, covering common bioinformatics analyses like whole genome and whole exome sequencing.
Analytics and Variant Annotation 🔍
18:01 - 28:00
Transforms genomic data from formats like GVCFs and VCFs into Parquet for easy querying.
Enables querying through services like Athena, decoupling variant and annotation data for independent updates.
Supports fine-grained access controls via AWS Lake Formation, facilitating secure data integration and analysis.
Use Cases and Benefits 💡
28:01 - 37:00
Population sequencing, clinical genomics workflows, accelerating clinical trials, and enhancing research and innovation.
Facilitates personalized care by combining genome data with medical histories.
Helps life sciences organizations build scalable, compliant infrastructures with minimal IT dependency.
Additional Capabilities and Roadmap 🚀
37:01 - End
Overview of related AWS services like HealthLake, HealthImaging, and HealthScribe.
Discusses ongoing feature development and invites feedback for future enhancements.
Resources and links for further exploration and testing of Amazon HealthOmics.
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Our expertise in AWS enables us to provide scalable, secure, and cost-effective infrastructure, empowering life sciences and healthcare organizations to drive innovation and efficiency. Whether you're looking to enhance data management, optimize workflows, or scale your operations, PTP’s AWS solutions are designed to meet your unique needs and accelerate your journey from concept to market.
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