cBioPortal Webinar 1: Introduction

Introduction to using cBioPortal. This video provides an overview of basic usage of cBioPortal, including data exploration using the interactive study view, group comparison functionality, and querying specific genes for gene-based analysis.
Recording of a webinar given on April 30, 2020.
0:00 Overview of webinars
1:45 Overview of cBioPortal
10:22 Homepage
12:40 Study View
17:02 Patient View from Study View
18:45 Group Comparison from a Study View chart
24:22 Query from Study View
25:14 Query from homepage
28:02 OncoPrint tab
28:41 Modify query
29:42 OncoPrint tab
30:22 Mutual Exclusivity tab
30:41 OncoPrint tab
33:44 Cancer Types Summary tab
34:20 Plots tab
35:49 Mutations tab
37:57 Co-expression tab
38:54 Comparison/Survival tab
40:49 CN Segments tab
41:52 Pathways tab
42:23 Download tab
43:30 Multi-study query
44:22 Wrap-up
46:00 Q&A

[@annaritascialdone3522]

Clear and helpfull ! thank you

[@cbioportal]

Glad it was helpful!

[@toobacheema8661]

What is the difference in the data in genie.cbioportal and just cbioportal?

[@cbioportal]

genie.cbioportal.org hosts data from the AACR GENIE consortium as well as a few other studies. The major difference is that data in genie.cbioportal.org require users to agree to some terms of use prior to access, while cbioportal.org does not.

[@hamzaali-ni8qg]

What bioportal companies? Anyone can define

[@hasnainbaqir1072]

how can we get these slides?

[@cbioportal]

Slides can be found on our docs page: docs.cbioportal.org/user-guide/overview/