Homology Modeling using Modeller and Chimera

[@arifhossin5000]

Nice tutorial! How to save as pdb format?

[@mriganka7331]

Very useful tutorial, thanks.

[@hweyfernyeo1853]

Hi may i ask that how should i save the pdb file with the selected query model?

[@aroojarshad1924]

i modelled a target protein only through the use of modeller 9.22, but now i want to use that protein for docking , but before that i need to do minimization of protein structure, can you tell me how to do it through chimera ?

[@stawikowski]

That is a subject for another video.... In summary: plato.cgl.ucsf.edu/chimera/docs/ContributedSoftware/minimize/minimize.html but remember this is minimization in vacuum...you could solvate your protein and minimize firs for much more reliable results...See Tools > Amber >Solvate...

[@jaquelinevazquez5325]

Muchas gracias!