Very crucial and informative, really appreciate it
@BioinfoCopilot10 ай бұрын
Thank you 🙏
@WiseLaboratoryLife Жыл бұрын
Thank you for sharing your knowledge, I wondering about the reason that differences between the chimera and discovery studio in hydorgen interactions, and additionally is there any other options to detect other interactions like hydrophobic in chimera? Thanks in advance :)
@BioinfoCopilot Жыл бұрын
Thank you. The main difference is the cutoff or threshold value’s between the two software. I would recommend you to use discovery studio visualizer for calculating H bonds and other types of interactions. And use chimera for publication quality figures.
@oliviaperezvalera2116 Жыл бұрын
Thank you for the video. I have question, Is necesary to have the license to publish the results of docking visualized with discovery studio?
@BioinfoCopilot Жыл бұрын
Yes you can.
@blister9812 жыл бұрын
could you share the link of your research article which you have shown in part1 of video
I tried to follow your video, however, in using ChimeraX, Whenever I select the Macromolecule and click on show surface, my ligand get hidden inside the protein as it is placed inside the protein at the active site, is there any way I can make the protein's region around the ligand transparent so that the ligand can be visible? Thank you. Your videos are quite informative btw.
@BioinfoCopilot Жыл бұрын
Yes you can do it by using view/focus option in select. I have also shown in the video how to make it transparent.
@BioinfoCopilot Жыл бұрын
Moreover you can select only amino acid residues and then select surface. In that way your ligand will be visible. If its inside the pocket you can use the view/focus option.
@italhaislam Жыл бұрын
@@BioinfoCopilot Thank-you for replying, can you please also suggest some alternative to OriginPro to make graphs as it is a paid software, I also have results in .dlg files from Autodock 4.2 by performing 100 Runs of docking, and I not sure whether to report the all results of 100 runs in research paper or just the cluster histogram information.
@BioinfoCopilot Жыл бұрын
@@italhaislam Instead of Origin you can use Qtiplot www.qtiplot.com
@BioinfoCopilot Жыл бұрын
@@italhaislam Report all the results using box plot and also use 95% CI for better statistics
@linhtruong70539 ай бұрын
Hello. can you guide how to set up window on Mac?Thanks in advance
@BioinfoCopilot9 ай бұрын
Use Docker. kzbin.info/www/bejne/rpmqiqKYqqxoZpo
@israelvq1 Жыл бұрын
hello friend, I want to know if I can publish figures made with the free discovery studio visualizer, although I haven't paid the license
@BioinfoCopilot Жыл бұрын
Yes absolutely. You can publish figures with the free version of DS visualizer.
@sevkiadem2522 жыл бұрын
which do you use program for figure preparation.
@BioinfoCopilot Жыл бұрын
I use a combination of tools to make the figures as I have shown in my video.
@asmaaasmaa8356 Жыл бұрын
Ihave a problem when the enzyme separates from the molecule please help
@BioinfoCopilot Жыл бұрын
Do not quite get it whats the actual problem you are facing.
@nihalverma9007 Жыл бұрын
how did you download discovery studio visualizer on mac OS?
@BioinfoCopilot Жыл бұрын
Its not for macos. DS only works for windows and linux. In Macos you have to install virtual machine.
@gauravranjan4951 Жыл бұрын
thank you for the knowledgeable Session
@BioinfoCopilot Жыл бұрын
My pleasure
@blister9812 жыл бұрын
Most useful video. Please make a video on representation of MD simulation results
@BioinfoCopilot2 жыл бұрын
Absolutely
@mohdkashif17992 жыл бұрын
Can you please send me the link of your publication of docking