Introducing FASTQ Files

[@joeyoviedo5202]

Hi thanks for making this video, what would you recommend doing if the PE fastq files for a sample where at least one of the fastq files is corrupted. Thank you

[@younesabuelayyan4520]

why did you stop making new vides?

[@rozettaify]

how to convert fasrq to fasta by python

[@ProfessorHendrix]

Well, doing so will lose the quality score, but you would need to print the > symbol, followed by the record.id, then print the record.seq. You could also look into SeqIO.write

[@tinacole1450]

I am comparing two files using a BASH script but cannot seem to workout the code: The goal is to print out several matching files in a text document within its own folder, the OUTDIR. i=./interesting_motifs.txt fsa=./r_bifella.fasta OUTDIR=./motifs/$*.txt #Iterating over fasta file with r_bifella with counts #search that directory for files for DNA in fsa: if DNA in i: echo $i.txt | -o OUTDIR:

[@ProfessorHendrix]

looks like a combination of bash and python, which may not work. Maybe try using python? I am not ready to give tips on bash actually, I probably need more practice