Loupe Browser 6 Tutorial - Basic Tools & User Interface

[@Anvarovna]

Thank you so much! This is clear!

[@Clara-ue8by]

Great tutorial. I do have a quick question here, I have a gene of interest, how do you find what cell type express this gene of interest in loupe browser?

[@singulomicscorporation5321]

You can follow the tutorial to annotate clusters with cell types using marker genes. You can then select the category that has your cell type annotations. Change the “Categories” to “Gene/Feature Expression” and type in your gene of interest. This will allow you to view where the gene is expressed on UMAP and in which clusters in a violin plot. The violin plot icon is at the lower left of the Loupe Browser.

[@niiinjaaa3241]

I love you. I love the loupe browser. Thank you for showing all of that to us.... This is amazing

[@rebeccatagett731]

This tool is anything but intuitive

[@niiinjaaa3241]

Well, if you prefer you can do it on R............... Probably even less intuitive haha

[@fsh9134]

Thank you! very informative tutorial