I don't know you but I love your voice. Thanks for the tutorial!
@musicaorion6 жыл бұрын
Really very nice explanation. Thanks so much.
@pauladaluzhenriquez7572 жыл бұрын
you helped me so freaking much, thank you!
@bridgettsmith72062 жыл бұрын
Thank you for the video
@dhurjhotisaha75414 жыл бұрын
Hi, I liked your demonstration. Just one query - I couldn't remove the dendrogram using Rowv = NULL, Colv=NULL or keep.dendro = FALSE commands. Do you have any suggestions? BTW I was using heatmap not heatmap.2
@AqleemAbbas3 жыл бұрын
I have tried your protocol, all is good, however I could not find color key and histogram values in my case, I mean relative abundance scale top left in your graph
@ishikawa42334 жыл бұрын
You helped me a lot! Thanks :)
@mitylene_bailey2 жыл бұрын
Awesome! Thanks
@Nisab4 жыл бұрын
i spent hours on a heatmap, then watched this video, found that i was using x
@LGARCIA205047 жыл бұрын
Helo Leah, thanks for the great class. I have a simple doubt, in my heat map, i can not do the software read my colum names, they put "NA" in the place. The message error is: >>Missing column names filled in: 'X1' [1] You can help me? Thanks for your attention.
@LGARCIA205047 жыл бұрын
So i can't have different gene names?
@cts24297 жыл бұрын
Hey, thanks for the video, I'm a complete novice that's having a lot of difficulty though. Right a 6:18 is there a reason why the column "Gene" shows up all the way to the left (it is all red)? I'm having the same problem making my heatmap -- R is making a column that shouldn't be there and I can't figure out how to remove it. When I try re-importing like you did at 7:33, it doesn't disappear when I do it like it did for you. I'm using R studio for Windows though and my import menu isn't quite the same as what you have. I can't pick Row Names using the first column in this version for windows, my only option is to use 'the first row as names'.
@theanalyst17284 жыл бұрын
i cant find "heatmap.2" in my R but only "heatmap" and so it gives error and I cant get heapmap. Why is it like that?
@winnumber1017 жыл бұрын
Thank you Leah
@romennaorem6 жыл бұрын
In your script, there is no script for separating between the cells with some gap of white lines. How to separate between the cells with gaps?
@walaahussein4624 жыл бұрын
Thank you so much
@vassiasal7 жыл бұрын
Very nice introduction and hands-on tutorial thank you! I have some microarray data which I normalized with the limma package and I want to use the p-value from the new file produced containing all the statistics, to filter down and thus create my heatmap. Because otherwise, my matrix file is very large to produce the heatmap. Any suggestions on how to do that?
@benjaminleyton85454 жыл бұрын
I have a question , I can't install gplots but I found the packages "ggplots2" . What is the difference between both?
@xulanting4 жыл бұрын
ggplot22 is a new version of ggplots
@acharyaaviseka858 жыл бұрын
Hello Ms. leah, I am new to use R studio and I have a .csv file with gene function and fold and I want to make Venn diagram I don't know how to do it can you please help.
@tinacole14503 жыл бұрын
Great 👍
@siyabusamkuhlani14376 жыл бұрын
Thank you!
@saumya2sarkar27 жыл бұрын
x y heatmap.2(y,main = "Sample", trace = "none", margins = c(10,12)) Error in .External.graphics(C_layout, num.rows, num.cols, mat, as.integer(num.figures), : invalid graphics state what does this error mean?
@saumya2sarkar27 жыл бұрын
Yes, Solved. One more thing, when the data is uploaded and processed with data.matrix. The data is showing NAs in the Gene column? I am using windows & OS. Any suggestions?
@souradeepaghosh21124 жыл бұрын
What do you mean by margins 10,12? What does it signify?
@howtodataviz57863 жыл бұрын
That represents the size of the margins on the x and y axis of the plot, or how much cushioning space do you want. It basically allows your x and y labels to have more space, so that they don't get cut off.
@sadiasalam34316 жыл бұрын
Hello Leah! Thanks for the video. I just have one problem. How can I change my Row name in the plot?
@aheedan99572 жыл бұрын
You can change the name by rowname (x)
@kimtu885 жыл бұрын
Thank you for the video. I have problems with launching "gplots" in Rstudio, the warning message is: Attaching package: ‘gplots’ The following object is masked from ‘package:stats’: lowess Warning message: package ‘gplots’ was built under R version 3.5.3 Can you please help me to fix that?
@leahbriscoe91305 жыл бұрын
Hello, that warning message comes up when you load gplots normally, so it's not an issue. You don't have to worry!
@leahbriscoe91305 жыл бұрын
Hello, that warning message comes up when you load gplots normally, so it's not an issue. You don't have to worry!
@leahbriscoe91305 жыл бұрын
Hello, that warning message comes up when you load gplots normally, so it's not an issue. You don't have to worry!
@kimtu885 жыл бұрын
@@leahbriscoe9130 Thank you, I run succesfully
@seohyeongkim76437 жыл бұрын
Hi Leah, Thank you for your nice explain. Actually, I can't change the numeric matrix to my species gene's name. How can I change?
@matthewogwu7647 жыл бұрын
Thanks Leah...Yea I am having similar challenge and it has to do with the species names been replaced by numbers. Please help
@matthewogwu7647 жыл бұрын
Hello Leah. Kindly share the script used in the video. It will be helpful.
@matthewogwu7647 жыл бұрын
I got it. I will give it a go and update you. Thanks.
@matthewogwu7647 жыл бұрын
Thanks Leah...
@kyshark18 жыл бұрын
Hi Leah, thanks for the video. Any chance you could upload the csv file?
@kyshark18 жыл бұрын
Awesome! thanks a lot!
@mianadnankakakhel11853 жыл бұрын
It would be better to paste the link of the code in description
@howtodataviz57863 жыл бұрын
Thanks for the suggestion! Added code for the advanced heatmap from my other video.
@mianadnankakakhel11853 жыл бұрын
@@howtodataviz5786 i will be thankful if you share a link in here. Thank you. And how about microbial abundance bar plot
@howtodataviz57863 жыл бұрын
@@mianadnankakakhel1185 Good idea for the next video! I put the link in the description.
@mianadnankakakhel11853 жыл бұрын
@@howtodataviz5786 thank you
@bva33588 жыл бұрын
i need r automate script
@DividedStates6 жыл бұрын
there is literally no useful explanation whatsoever. It would have been really cool to go into how the data needs to be organised and why and how to achive that from a crowded data frame instead of just swirling around with the mouse with the words "this is the data", because that type of magically data organisation usually don't work reproducably.
@howtodataviz57866 жыл бұрын
I'm sorry you weren't able to find what you were looking for. This tutorial has a simple goal: how to create a heatmap. So it takes off from a point where the user already has the matrix they want to plot. Perhaps a tutorial you're looking for would go over the R Data Frame and other R Objects. I'm certain there are good resources for this, like DataCamp.