Molecular Dynamics - chapter 1: Equations of Motion

[@profharoldocandal]

Clear explanation! We need people like you.

[@MoBioChem]

Thanks! :)

[@nurrohmannurrohman1280]

amazing amazing! this is an easy transfer of knowledge and understanding

[@Omgtired]

Superb! really nice start for MD simulations!

[@gouravchakraborty6196]

Thank you very much for your videos...These videos are gem

[@georgiosmikaelian6144]

Excellent video and very understandable. Well done!

[@MoBioChem]

Thank you very much for watching. I am happy that you liked it.

[@熊鞋子]

🥲Those equations brought tears to my eyes.

[@shilpichowdhury5866]

Useful video..very clear explanation.. Thank you so much.. Go ahead.. 🙏

[@hashrafi7148]

Very clear explanation. Good Job man!!

[@scribblesinbioinformatics6246]

Very good explaination.. keep up the good work. Looking forward to more videos from you.

[@antoniowu1995]

Awesome video!!

[@vipulkumar2726]

Excellent 👌

[@enderaraujo398]

Excellent!

[@md.gaziulislam9558]

Could you please share with us how you produce such nice simulation pictures? Your videos are really awesome and tactical.

[@MoBioChem]

Thanks! We use the free software Visual Molecular Dynamics. It is very easy to use and they have nice tutorials. www.ks.uiuc.edu/Research/vmd/

[@scribblesinbioinformatics6246]

Will you please let know what book have you referred to prepare this and next two videos?

[@MoBioChem]

In fact it is very hard to say a book because there is not an only book where everything is explained properly. These 3 lectures are a combination of general knowledge, many papers, tutorials of different MD programs and probably some books but I don't have a list of them. My favorite one is Computer simulation of liquids by MP Allen, DJ Tildesley, where you can find many of the most tricky parts of the talks such as the periodic boundary conditions and the Ewald summation. In addition, I like the following paper where you can find a lot of useful citations: www.livecomsjournal.org/article/5957-best-practices-for-foundations-in-molecular-simulations-article-v1-0

[@happiness1546]

I actually struggle a lot to understand these topics, but your explanations are very clear!! Would it be possible to have the slides that you use in these videos? Thanks in advance :)

[@MoBioChem]

Please, contact us through our website mobiochem.com

[@KJSHYSH-p5k]

Why vi = dqi/dt at 8:12?

[@MoBioChem]

This is the definition of velocity

[@KJSHYSH-p5k]

@@MoBioChem Oh I was mistaken for the q as a charge. Thank you for your answer!

[@OmidSarbakhshian]

is it possible to share your slides with us?