Perform docking ONLINE in 5 MINUTES |CB-Dock |Cavity-detection Blind Docking |Easiest & best docking

[@syedrizwanshah3935]

Thanks a lot for making this difficult task easy for me & everyone.

[@MuzzammelRehman]

Thank you

[@mdataulislam496]

Good to see you to help the scientific community.

[@MuzzammelRehman]

Thank you sir.

[@cappamaampi2452]

Think you for this good presentation

[@MuzzammelRehman]

So nice of you

[@inayatsaidi3872]

Thank you very much sir. God bless you

[@MuzzammelRehman]

Thank you

[@MuhammadFaizan-mi9yo]

Appreciate sir. kindly make the next video on the IEBD database for epitope detection and all its aspects.

[@navgeetsandhu7029]

Thankyou so much sir. Docking seems so easy

[@MuzzammelRehman]

You are most welcome

[@kashafaltaf3462]

Asalamu Alaikum sir, Your lectures and tutorials are amazing. i request you to make a separate tutorial on pharmacophore modeling using any online platform or any other tool which is free /trial licensed like ligandscout.

[@greyfield6828]

Brilliant presentation. thanks\

[@MuzzammelRehman]

Thank you dear and also share with others to promote free education

[@susmitasahoo3743]

This helped a lot in my thesis work. Thanks a lot. Please make a video on how to use to patchdock and firedock server.

[@rahulnaga5010]

That's a very nice presentation...sir can you please suggest me how it will use as a standalone...

[@fizachaudhary7049]

fantastic

[@MuzzammelRehman]

Thank you

[@ogunoluwamayowa4749]

Great content as usual. Thank you. I have a question, do you think online docking is acceptable in International journals?

[@MuzzammelRehman]

Yes you can publish after validation

[@vincentbeltran8267]

@@MuzzammelRehman How to do validation?

[@elhadadsalaheddine6797]

Hello professor , thank you so much for you explanation, i wanna ask you if the pdb file of the complexe generated with cb dock can be submitted to MD simulation without any problems?

[@mohsinshad9844]

Which is the best software / tool among all the docking software.

[@prabirmondal8541]

Dear sir, how analysing the figure obtained from cd dock... Please give a supporting lecture ( video)..... Thank you

[@fereshtehazimian8044]

Thank for presentation. I just wanted to ask a problem. When iam using this docking program, it couldn't able to recognize my ligand. Can you give me suggestion? Thanks

[@soumitrashome1642]

Thank you for the information. My receptor for analysis is greater than 3 MB and the server is not uploading it. Can you please suggest how to overcome this issue?

[@emanmaherabdelhamidmostafa6560]

Plz, what is the difference between autodock and cbdock? Are they the same using?

[@vincentbeltran8267]

How to dock if the pdb file that is only available for the protein is in complex with a ligand? Do I need to remove that ligand from the structure before inputting it to CB-DOCK? If that is how it is done, how to do it?

[@vincentbeltran8267]

It seems like that the protein file size limit for CB-DOCK is only 3 MB. My protein is 4.5 MB. Do you know any pdb file size compressor?

[@juniorkidscorner]

Sir how can we know which ligand should we use?

[@vincentbeltran8267]

Can I dock on any protein even if it is not a receptor?

[@sanjeev1227]

May I know the protein for finding antianginal activity pls help sir

[@7-zoolmen7a11]

How can we assess whether the link between a protein and a ligand is strong or not?

[@MuzzammelRehman]

For this you can perform Molecular Dynamics Simulation

[@kashafaltaf3462]

Asalamu alium sir , want to now the best best latest chemical database to screen out the best leads? As I remember you have deliver one lecturer on it. please send me the details. than you

[@MuzzammelRehman]

You can use ZINC, Chemble , MCule, NCI , Asinex etc

[@jddc9728]

Can i use this cb-dock as a basis for my grid sizes in autodock vina?

[@huzaifarana4532]

How many ligands can be docked in cb dock?

[@shamalasham102]

For the CB dock, it is necessary to perform energy minimization for ligand molecules before uploading the file.

[@MuzzammelRehman]

No

[@shamalasham102]

sir, can we use this CB docking for paper publication?

[@MuzzammelRehman]

@@shamalasham102 yes

[@shamalasham102]

thank you sir

[@anushaupadhye5624]

Sir o ligang ka size kam chaiye Aisa bol raha hai us ligand file kon kaise Kam kre

[@farzadmolani7435]

Hi. How can someone get RMSD per each pose?

[@laibagull7883]

Jab ligand ka size bra ho ?

[@kashafaltaf3462]

actually I forget that one .

[@MuzzammelRehman]

Ok