Autodock Vina Tutorial | Protein Preparation

Protein preparation: parameters, protocols, and influence structure-based drug designing approach.
In the case of X-ray diffraction, this experimental strategy does not discriminate between electron density coming from static protein atoms or water molecules, meaning that most protein structures solved by X-ray diffraction also include so-called crystallographic waters (check the non-bonded red dots on the protein structure below). These molecules are not important for our particular docking simulation, and we also have to remove them.
6LU7: www.rcsb.org/s...