PyRX ligand docking tutorial

[@lyra88]

Best PyRx tutorial I've found yet, thank you!

[@yhoff76]

Awesome tutorial, it worked down to the letter!! I used TextWrangler and Numbers but achieved the same results, thank you sir.

[@starrchoc]

Thank you so much for this tutorial. It's so clear and easy to understand. I really need this tutorial to do my research. Once again, thank you so much for the help!

[@SarkisDallakian]

Thank you for this tutorial. Much appreciated and liked!

[@TheWysele]

Thank you so much, dear sir, for this awesome tutorial. I am only beginning my PhD and your video helps me getting started.

[@anandarup-bnk]

This is a wonderful tutorial. Thanks a lot.

[@DrLHKamble]

Great work.

[@hansc.ferreryulfo4599]

Thanks!! Very useful!

[@RakeshBhowmick]

Excellent tutorial. Sir, please make a video on molecular simulation of protein ligand interaction using Gromacs

[@sabaiftkhar4270]

thank you. great tutorial

[@nyashamuzariri2522]

Very useful thank you

[@MrRutash]

much needed ..i liked it very much...

[@yurikomartinez2533]

thank you very much!

[@mni79]

good work

[@selenahataye2544]

how did you get promol onto your Mac? I can't open an exe file and the zip file won't download the software.

[@ProfessorBeuBenz]

what if I want to dock novel derivative which I have designed?

[@Rome532]

Professor are you sure autock vina is autonomous coordinate x,y, z 25 ? For me it is important for my research I am looking forward to reply

[@spradeep5889]

Is the grid box generated is auto is it necessary to change grid box size.

[@sanjanabhagat1822]

Hello ,i wanted to know while performing vina through pyrx ,the grid is automatically predicted or we have to set it ,as in pyrx the grid is itself set at the centre ...plz help me in this

[@mssakib5421]

Great video! Could you please tell which PyRx version you used in this tutorial?

[@proteincharacterization4438]

I think it was 0.9

[@Rome532]

Protein Characterization hy professor I have a question in the pyrx tutorial are you sure auto dock Cina wizard is automatically with coordinate x,y, z 25,25,25 ? For me is important this step Is it autonomous good to find right value affinity energy ? Thanks a lot I am looking forward to replay as soon as possible

[@mibrh3751]

great video! I wanted to know why the following steps were skipped: removing water, adding hydrogens, merging non-polar hydrogens, and adding partial charges? I'm not familiar with PyRx

[@Alchemist4U]

I am also looking for these answers

[@camilabastosnunes9438]

love

[@nitishchauhan5511]

Hello, I have doubt that the free version of PyRx software is sufficient for publishing the docking studies.

[@agniruudrrasinha7946]

When I try to download the ligand summary report , I cant find the excell option, only csv.

[@snehaagarwal7995]

M facing error while converting my protein to macromolecule( pdb id 4UTC)

[@syarifuddinhusain1874]

why its says ive downloaded 0 files?

[@mixtureofmedia]

Finally, no Indian accent bioinformatics tutorial . Thanks for sharing i can share this video with Undergraduate students.

[@nitishchauhan960]

Hii Dear, I am not getting any option to download ligand summary file in excel form.

[@mel7658]

@Rao Zubair Khaliq i didnt find the ligand from pdb i need a help plz