RNA-Seq Methods and Algorithms (Part II - Alignment Algorithms) 2015 UC Davis Workshop

This is a recording of the iPlant RNA-Seq workshop presented at UC Davis in September 2015. Guest Instructor Harold Pimentel (UC Berkley) takes us through Kallisto (pachterlab.gith...) and Sleuth (pachterlab.gith... new tools for working with RNA-Seq datasets. You can follow along with the tutorial conducted at the workshop by accessing the materials here (www.iplantc.org... scroll to the Sep 22 Intermediate program on RNA-Seq. In iPlant Atmosphere you can use the virtual machine that has be setup along with the tools and test dataset. To learn about using Atmosphere see: www.iplantcolla... ; Workshop VMs for these tools is listed in the Atmosphere image catalogue. See: ‘UCDavis_workshop_kallisto_42.3’ . Get an iPlant account at www.iplantcolla..., and see the iPlant user form at ask.iplantcolla... for more help.