Hi sir, i watched this entire video it is very informative. I want to do DNA- ligand simulations can i follow the same steps as mentioned in your lecture
@MariaAfz115 күн бұрын
not protein coding?
@komalkadam66312 күн бұрын
Fasta file save ke liye All file ka option nahi hai to kya karne ka
@khatendrareang912913 күн бұрын
Sir please suggest the software for plotting the graph for xvg files other than the XMGRACE, also please make a tutorial of it. Thank you.
@ronitroy519127 күн бұрын
great
@aishwaryaravi1746Ай бұрын
Sir I have followed your tutorial to carry out simulation however while preparing protein and ligand using Chimera ,while conversion of ligand to lig.mol2 an additional bond is created which is making further procedures difficult I am unable to parametrize the ligand from Swiss param
@renipertiwi8177Ай бұрын
very useful for the development of my research. thank you
@ahmedkhater5369Ай бұрын
Thank you for your help 🙏
@akanshasingh5213Ай бұрын
very informative
@gibsonalbertАй бұрын
Thank you so much Sir. You are so helpful to me
@lepkepduoiАй бұрын
Thank you so much Dr. Dweipayan Goswami
@tigerhillsupaАй бұрын
amazing video, which answered my question completed. However I wish to hear more how this mechanism gets impaired among people with diabetes
@ekomobongarchimedes9002Ай бұрын
Thank you very much for this video
@aissaouisoumia99472 ай бұрын
thank you so much
@gnanaraj1792 ай бұрын
your diagram is wrong. The forward primer will bind to the second strand, while the reverse primer will bind to the first strand.
@orhanulucay2 ай бұрын
Tahnk you Bro...
@nabinbhandari92122 ай бұрын
Hello, I am getting a problem finding out the Type strain of Spodoptera (insect) in ATCC where should I search it for..?
@DomiiQuezada2 ай бұрын
muchas gracias ❤
@DomiiQuezada2 ай бұрын
muchas gracias!!! ❤❤❤
@venkatraman26462 ай бұрын
❤
@vandanajakhar122 ай бұрын
Thank you sir
@ElizabethTaylor-c2m2 ай бұрын
Giuseppe Squares
@pulikkanjoby54352 ай бұрын
Great teaching. Thank you
@maheshkashte50872 ай бұрын
I want to submit viral sequence pls help me regarding
@maheshkashte50872 ай бұрын
What if query coverage is 99 percent
@KenKaneki-ew2rm2 ай бұрын
I want to extend the simulation from 100ns to 200ns. I used the extend command earlier but it does 200 from zero. I want to run it with continuation. Like the simulation should start from 100 ns to 200ns.
@bhavnabhardwaj5942 ай бұрын
Thank you so much
@iramsherazi19263 ай бұрын
Great Sir
@kaveripalekar39383 ай бұрын
Useful video
@zai99263 ай бұрын
Thankyou - You saved my time
@krunalrambhad55963 ай бұрын
Good explanation. I have used Combination of UCSF chimera and Pyrx for docking. Pyrx used same algorithm as autodock Vina. Only advantage I got in pyrx was it is much faster because it loads and minimised multiple Ligand in much lesser time than chimera where we individually add every ligand and save it.
@tanerduysak92703 ай бұрын
Thank you very much for this tutorials I have a question about the last part the movie section when I do my simulation some part of the protein seems to be out of the box and that parts looks like stretching out of the image. What do you think can make this issue. I mean first 200 frames are fine but after that that stretching start.
@drittepushpavathi80573 ай бұрын
i didt get grace installation properly.I got the error messege when i type xmgrace like below Can't open display Failed initializing GUI, exiting
@ofosuhemaajoyce94783 ай бұрын
Please concerning the editing we did at the MD.mdp Please is my calculation right Nsteps = 25000000 ; 2 * 25000000 = 50000 ps (50ns) Please is my calculation right
@helenedubrasquet72773 ай бұрын
hi, I have a problem when contructing my tree, I cannot select the Radiation visualisation, do you know how to enable it?
@uzmafarooque36273 ай бұрын
i cannot see the uninstall file in the folder and not even the UCSC folder. What should I do to uninstall chimera?
@AbdulMawdodPARSA-dz1yb3 ай бұрын
Hello teacher thank you so much for your good teaching! i have a question: if i have more strain how can I submit to the gene bank?
@deborahakinyemi28063 ай бұрын
Thank you Dr. Dweipayan for this vedio, please do I need to install ubuntu on my system before giving the commands? After pasting the command it says- 'sudo' is not recognized as an internal or external command, operable program or batch file.
@Molecular_Machine3 ай бұрын
You're amazing. Thank you!
@Molecular_Machine3 ай бұрын
For those who have an issue with maestro not starting or crashing, this command which was given by chatgpt helped me sudo apt-get install --reinstall libqt5core5a libqt5gui5 libqt5widgets5
@mantibiswas23073 ай бұрын
I have a problem with mol2 file, when I parameterize through SwissParam, its provide a failure report, and when I fix this, no details were shown, but it's still showing error.... How do I fix this?
@user-fp4fl8bs3p3 ай бұрын
use SMILES-form for your ligand
@SanjayUpadhyay-y8s3 ай бұрын
sir , i need to your support can we install two deferent version of gromacs with one system with mpi
@geelbookie10113 ай бұрын
Very informative, thank you.
@aftabulalam33103 ай бұрын
Thank you so much for your nice informative videos.... All your suggestions related to Gromacs worked for me...🙏🙏🙏
@abhishekdas68743 ай бұрын
Wil it be the same for AMBER forcefield
@tanzillehri6994 ай бұрын
sir i am facing an issue it says maestro faced a fatal error reason failed to load radeonsi driver how to overcome this ?
@chandukecharche-c5s4 ай бұрын
U said wrong that nothing has changed due to modification..the GI absorption became high.. The rules showed no violations in the modified drug..bro