Review and discussion of AlphaFold3
1:12:58
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@keyvan7784
@keyvan7784 16 күн бұрын
Thanks for the video. Could you also please add the session you had with Professor Buehler in October to your channel?
@peterobyrne5048
@peterobyrne5048 29 күн бұрын
Great talk by Brian. Would be interested to see if using multiple structures output from alphafold as the targets, try select for binders common across all, would it give some degree of dynamic binding.
@mr.athravakakde6163
@mr.athravakakde6163 Ай бұрын
Great content very helpful !
@paingsoekhant8731
@paingsoekhant8731 Ай бұрын
Very interesting❤
@wesswenson4415
@wesswenson4415 3 ай бұрын
How do you run it to evaluate two different proteins interacting with each other?
@StevenNess
@StevenNess 3 ай бұрын
cool
@龚朝辉-h5u
@龚朝辉-h5u 3 ай бұрын
good sharing, thx~
@StevenNess
@StevenNess 4 ай бұрын
epic
@amelieschreiber6502
@amelieschreiber6502 4 ай бұрын
Does the iterative design workflow of filtering with AF2 then redesigning with ProteinMPNN multiple times increase the likelihood of a single conformation for the final sequence (after you've loop through ProteinMPNN-->AF2 multiple times)? see 9:40 timestamp for example. Seriously good content btw. Thank you for this.
@jinghu5718
@jinghu5718 4 ай бұрын
really nice presentation!!!
@rosariovalenti9737
@rosariovalenti9737 5 ай бұрын
Thank you Sergey! I was looking forward to hearing your take on AF3 and how to make the best out of it :)
@indogen-z2872
@indogen-z2872 5 ай бұрын
we love sergey
@WeMakeItRainz
@WeMakeItRainz 5 ай бұрын
good stuff
@diegogranados2793
@diegogranados2793 5 ай бұрын
Thank you, Sergey! It was a very nice presentation :)
@davebruno218
@davebruno218 5 ай бұрын
Thank you sir
@beingbigz
@beingbigz 6 ай бұрын
Really happy to watch your video, learnt a lot things. Thanks
@biopharmmarkets2115
@biopharmmarkets2115 8 ай бұрын
So cool 😎
@kechengzhang1234
@kechengzhang1234 9 ай бұрын
is there any tutorial of combs method?
@feofandeuriman7524
@feofandeuriman7524 9 ай бұрын
Kushelev: The nanotechnological level. of representation of the protein structure in the form of spirals does not give an idea of the mechanism of protein functioning. Another thing is "wheel on wheel, wheel on rail"
@rhysm8167
@rhysm8167 10 ай бұрын
This was brilliant. Thank you!
@mytraveldiaries2611
@mytraveldiaries2611 10 ай бұрын
Thank you for explaining how DiffDock works. How does DiffDock deal with non standard molecules in pdb? Do we need to remove them before docking?
@gavinedward
@gavinedward 11 ай бұрын
An impressive speech
@EdT.-xt6yv
@EdT.-xt6yv Жыл бұрын
14:30 🎁 22:00 sequence for optimized function not structure
Жыл бұрын
Very useful. Thank you so much.
@huimax7399
@huimax7399 Жыл бұрын
nice work
@EdT.-xt6yv
@EdT.-xt6yv Жыл бұрын
9:45 the one & only area
@EdT.-xt6yv
@EdT.-xt6yv Жыл бұрын
2:20
@allanqiao
@allanqiao Жыл бұрын
wonderful idea
@md.hafizurrahman3829
@md.hafizurrahman3829 Жыл бұрын
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@l1ha0
@l1ha0 Жыл бұрын
Great talk
@Jaeoh.woof765
@Jaeoh.woof765 Жыл бұрын
39:28 - Homo-oligomeric predictions
@divyanshsharma5390
@divyanshsharma5390 Жыл бұрын
Don't know why youtube recommended this to me, not even biology student. But love it, super interesting.
@obsidian161
@obsidian161 Жыл бұрын
Prof. Chris Snow from CSU brought me here! Go Rams!
@jiayili123
@jiayili123 Жыл бұрын
very helpful
@biohut
@biohut Жыл бұрын
absolutely beautiful
@jackduggan96
@jackduggan96 Жыл бұрын
Thank you very much for making both this resource and the video publicly available, as a complete structural biology novice, it was very helpful!
@edthoreum7625
@edthoreum7625 Жыл бұрын
4:30 8:40 blood brain 🚧
@sabaokangan
@sabaokangan Жыл бұрын
Thank you so much for sharing this with us on KZbin ❤️‍🔥 from Tel Aviv
@Koos460
@Koos460 Жыл бұрын
Why is this recomended to me lol
@sabaokangan
@sabaokangan Жыл бұрын
Thank you so much for sharing this with us
@alexandramuller9055
@alexandramuller9055 Жыл бұрын
I am really not sure how I got this recommended, but I was pleasantly surprised.
@sebleblan
@sebleblan Жыл бұрын
Roughly what portion of tumors over express the necessary proteases? What is the next step? Are there animal studies underway? Thanks for sharing, this is very interesting!
@user-TengfeiLiu
@user-TengfeiLiu 2 жыл бұрын
@marias471
@marias471 2 жыл бұрын
I love when science is public and collaborative. Thank you so much for this beautiful class and tutorial!
@26goldnugge
@26goldnugge 2 жыл бұрын
Can you have closed Colab while it is running a task and when it gets done, it will save it?
@user-gt2pn4vt4j
@user-gt2pn4vt4j 2 жыл бұрын
💗
@klepto1840
@klepto1840 2 жыл бұрын
That's a great presentation and tutorial! Thank you. I have one question: are the results of the predictions saved on google servers or after download they are deleted?
@Christine636
@Christine636 2 жыл бұрын
Great presentation! That really helped me with finding my way through the notebook!
@hannesstark5024
@hannesstark5024 2 жыл бұрын
Appreciated!
@omaviva8657
@omaviva8657 2 жыл бұрын
hi guys, thank you for this great lecture, I wanna ask about the prerequisites needed to do this kind of research, the math, biochemistry, and so on