13. Downloading data, QC & Trimming - Lizabeth Katsnelson

[@amyhousemangenetics]

Hi! Great video, I was wondering, I need to do cutadapt of some fastq sequences I have. Is it possible to run cutadapt through R, using a python interface (sort of). I'm unsure of what your big purple thing is, so I don't know if I can use your trimGalore thing! Thanks, Amy

[@danielandrade8074]

You could use TrimGalore on Galaxy. I am currently trying to learn the parameters to remove low quality data.

[@celinaguerreropicon9685]

@@danielandrade8074 Have you had any success with Galaxy? I´m currently using it for a school proyect, and I'm really lost with Trim Galore.