16s rRNA Sequencing Analysis and Visualization

[@hanesh8483]

This is brilliant thank you! I am struggling with my bachelor thesis because I don't know how to visualize my data because there are so many ways and this gives me a great overview of what is important!

[@mahbubanam2683]

Thanks for the contents❤ Galaxy and Megan just blew my mind!!! Have done most of the visualizations on plotting softwares until now 😬

[@enriquep4857]

Nice video. It will be amazing if you make a video about create nice graphs using phyloseq.

[@nuriar4314]

Thanks for the video, it is really useful!! It would have been nice if you showed the imported count_table like you did with the taxonomy file because you used a final.full.count_table that is not produced with the Mothur SOP, is it?? I think a few of us are struggling with the comment lines in the count_table in mothur. Any advice is greatly appreciated 🙃

[@mostafaismail4253]

ATAC seq and CHIP-seq please ❤️❤️❤️, but great video bro ❤️❤️❤️

[@putbassboi]

Great video!

[@selfstudyplan840]

Thank you a bunch . please I need you help about this segment of code count_high 100,] count_high2

[@dohanpramudia93]

thank you very much,

[@WinnifredDuk]

Great video. You have video of how to create primers?

[@himalipandhi9624]

what if i am not using Miseq particularly?

[@crackers0413]

Hi, there were a few errors in the code which I can't find solutions to online: Error in read_delim("final.full.count_table", delim = "\t", escape_double = FALSE, : could not find function "read_delim" Warning in install.packages : package ‘ggtree’ is not available for this version of R Warning in install.packages : package ‘treeio’ is not available for this version of R If anyone has experience with these issues, please comment

[@ebrahimshokoohi6372]

Thank you very much. How do you import your files to Rstudio? As you said we have three files by name final. I would really appreciate it if you assist

[@rabiaejaz7717]

kindly tell me which command is used to separate taxonomy into kingdom, phylum, class, order, genus and species

[@LiquidBrain]

Depends on which command you are running on and which stages are you in during the analysis. If you already have a table dplyr::filter () will work just fine :)

[@TekkoNet]

I don't see the github page in your description!

[@LiquidBrain]

Oops, just added that. You should be able to find it now

[@TekkoNet]

@@LiquidBrain Thank you!!

[@cindelynvaldovinos6101]

p͓̽r͓̽o͓̽m͓̽o͓̽s͓̽m͓̽ 🌟