4.3. Next Generation Sequencing - Practice Session : Mapping of Reads to the Genome

[@marwanmahmoodsaleh8088]

Hello I had done the whole genome sequence by NGS (Illumina) of the bacteria. The files I received from the company are Fastaq1, Fastaq2, Filtered 1 Fastq Filtered 2 Fastq and analysis results file include :rmdup.bam.bai, rmdup.bam, filtered vcf and annotated vcf. Please tell me which of these files should be converted to FASTA and submitted to NCBI? Thanks

[@asadrasheed1000]

bro can i have your contact?

[@julesdrums6167]

How do you use galaxy to convert a fasta file to a tab delimited file ?