Bioinformatics Pairwise sequence alignment/pairwise2 in Biopython

[@emilianobalderasramirez8954]

Wow! thanks for the tutorial!

[@jonasismaelsilvamarrero4143]

Very good video. Thank you so much!

[@Avra_b]

Great video Lana! 🤗

[@LanaDominkovic]

Thanks Avra!

[@Full-stack1198]

A great video ! i hope that you keep psoting videos

[@LanaDominkovic]

Thank you!! I will. I plan to continue filming in February

[@Full-stack1198]

@@LanaDominkovic best of luck ! by the way do you have a video on parsing ? i was looking in uour channel i still didn't find it

[@LanaDominkovic]

@@Full-stack1198 parsing what excatly? I have topics about parsing fasta/fastq files with biopython. Are you looking for something different?

[@Full-stack1198]

@@LanaDominkovic i was looking for parsing fasta files and i have found my answer in your channel ^_^ that's great, i have another question, i designed the local alignement alorithm but i want to allow one mismatch, could you tell me how to do that ?

[@LanaDominkovic]

@@Full-stack1198 you used biopython or wrote your own algorithm? And if you used biopython you used pairwise2 module?

[@LanaDominkovic]

Thank you for visiting my channel! If you want to support me, the best thing to do is to subscribe and to share out the content :) Make sure to watch my other videos as well. Thank you :)

[@ramshaazhar7338]

Hello Lana, Share your E-mail address .

[@LanaDominkovic]

@@ramshaazhar7338 hi Ramsha. Currently I dont have bussiness address. You can contact me on twitter if you would like to send me message

[@ramshaazhar7338]

@@LanaDominkovic ok.

[@itsjs000]

Hello, have you ever written a script to do a multiple alignment via ClustalW using biopython?

[@arthurpinn3731]

what does the asterisk mean in front of alignment after the format alignment command?

[@MahendraSingh-ge5wz]

Thanks, lana

[@LanaDominkovic]

No worries :)

[@buraqghassanhamza6530]

Thanks lana ❤️,it’s work but i have these message BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. warnings.warn( Can you tell me how can i fix the code depending on this message pls?

[@LanaDominkovic]

hello. did u try replacing bio.pairwise2 call with Bio.Align.PairwiseAligner call? thank you for nice message