Bioinformatics with Biopython - Full Course | 1 hour Python for Bioinformatics tutorial

[@LanaDominkovic]

Thank you for visiting my channel! If you want to support me, the best thing to do is to subscribe and to share out the content :) Make sure to watch my other videos as well. Thank you :)

[@BiologyIsHot]

Finally a video that doesn't spend 30% of the time showing you how to use pip/conda, as if you will be able to follow anything else if you don't know how to install packages

[@mateuslemos126]

This video is awesome. Crazy to think it was uploaded 2 years ago. I can't wait to check your most recent videos!

[@farzamani]

Thank you for this tutorial! I'm new to bioinformatics and this is such a great help as a starter

[@LanaDominkovic]

Thank you so much for your comment and I am really helpful you find this useful! Make sure to also follow me on twitter for more content :D

[@오신근-y8k]

Thank God! that I found this video. Lana, you are an awesome teacher. I love you ❤

[@fuma9532]

At 20:11 I ran into an error: "StreamModeError: GenBank files must be opened in text mode." By looking at the documentation, I added retmode="text" to the efetch parameters, that seems to have solved it.

[@fuma9532]

At 35:35 I get an import error "ImportError: cannot import name 'GC' from 'Bio.SeqUtils'" I used: from Bio.SeqUtils import gc_fraction gc_fraction(covid_dna) instead

[@evertonreid4295]

Great video, well explained. I cant rate it anymore its the clearest one I have found so far Thank you lana *****

[@LanaDominkovic]

Thank you. I am glad you enjoy the content :)

[@GaryMahal]

this was sooooooooo good :) thank u so much

[@LanaDominkovic]

You're so welcome!

[@comics21nt70]

great tutorial!

[@LanaDominkovic]

Thanks!

[@조바이든-r6r]

wow great video! really appreciate ur effort!

[@LanaDominkovic]

Thank you for watching :)

[@s1va3209]

Superb.

[@LanaDominkovic]

Thank you! Cheers!

[@pedroarturowagnerrodriguez4385]

ESPECTACULAR

[@somayehghasemi6112]

thanks very useful

[@LanaDominkovic]

Glad it was helpful!

[@sabinaanibassabinaanibas]

Hi. I am looking for a good topic for my bachelor thesis in field of Bioinformatics using Pyhton. I am studying Computer Science but this relationship between informatics and biology, genetics, etc.. is so appealing, so do you guys have some ideas or advices? Thanks in advance :)

[@omarismail4734]

Splendid tutorial! I can't wait for more. Are you going to give a tutorial of how to use BioPython with machine learning (Chapter 16 in BioPython Cookbook)? It will be really grateful and thankful.

[@LanaDominkovic]

Thanks!:) I will think about makin 2nd part of the tutorial as there are some parts still missing to cover all biopython functionalities :)

[@devenwebster4655]

this is an amazing tutorial. But im having an issue running some of the codes. For example, in day 2 whenever I run the code to read the NCBI databases there's always a size error and I don't know why. I was wondering if it was a mac issue.

[@LanaDominkovic]

Hi, which part of notebook you are running? And what excatly is the error?

[@omniatomniah]

the first notebook is deleted

[@LanaDominkovic]

day 1 notebook? it's here: github.com/lanacaldarevic/12-days-of-biopython/blob/main/12_days_of_biopython/day_01/day_01-quality_reads_fastq.ipynb

[@GauravSharma-gd7pd]

Hello ma'am. I am getting this error. Can you help me out? Traceback (most recent call last): File "", line 1, in File "C:\Users\USER\AppData\Local\Programs\Python\Python311\Lib\site-packages\Bio\SeqIO\__init__.py", line 625, in parse return iterator_generator(handle) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Users\USER\AppData\Local\Programs\Python\Python311\Lib\site-packages\Bio\SeqIO\FastaIO.py", line 187, in __init__ super().__init__(source, mode="t", fmt="Fasta") File "C:\Users\USER\AppData\Local\Programs\Python\Python311\Lib\site-packages\Bio\SeqIO\Interfaces.py", line 64, in __init__ self.stream = open(source, "r" + mode) ^^^^^^^^^^^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: 'sequence.fasta.txt'

[@LanaDominkovic]

Hi, it seems your program cannot access following file: sequence.fasta.txt you need to have it on your local machine :)