Calculating the vibrational density of states from a molecular dynamics simulation

[@MathwithMing]

Hi professor, thanks for making these videos. I wonder if the videos from this series can be put into a playlist so it’s easier for beginner to navigate. Also, what would be a good reference on this material? Thank you very much!

[@boriwayetemitope7044]

Thank you very much for creating this helpful video! Regarding the format for saving the velocity dump file from an NVE simulation, is it necessary to include details like atom ID, atom type, coordinates (x, y, z), and velocity components (vx, vy, vz)?

[@gtribello]

You would definitely need the velocity components. I would probably print out the atom IDs as well so that you can check that you are making the time series for each atom component correctly.