Cell Ranger - Process 10x genomics data (Part2 - Hands-on)

In this video we will do hands-on of cellranger tool.

[@maidach6964]

It was soo soo soo easy with your explanation literally i am a new student and i didn't even listen about cell ranger but you made it extremely easy and honestly i will follow and watch your tutorials.

[@bioinfquests]

Thanks for encouraging feedback. Appreciate if you shout out about my channel in your network. This will boost my channel. I will soon be posting some videos on seurat.

[@sanjaisrao484]

ERROR: Permission denied: couldn't open MRO file sir I am getting this error, what to do ?

[@aram8458]

Mean and median here is different here. But both are different parameters (one is gene and other is reads) and cannot be compared.

[@bioinfquests]

Hi. Thanks for the feedback. Do you mean the 2 qc parameter? Total umi and total genes in the violin plot? Yes they can't be compared directly via violin plot since y axis is different for both. The correlation plot is helpful to see how much correlation you see. Usually correlation is high. I hope I understood your point of view.