GenomeRunner - Annotation and Enrichment analysis of Next-Gen Sequencing data

sourceforge.net/projects/genom...
GenomeRunner is a program for annotation and enrichment analyses of user-provided genomic features of interest (FOIs) against (epi)genome annotation features (GFs) available from UCSC genome browser. GenomeRunner is a "high-level" genome data analysis and interpretation tool, that is, it helps to interpret a set of genomic regions of interest within genome annotation context.