How to extract the pairwise FST information from an Arlequin AMOVA and make a graph

This tutorial shows you how to extract the pairwise FST information from an analysis of molecular variance (AMOVA) that was performed using Arlequin. This information is extracted both in graphical and tabular (matrix) formats.
This tutorial assumes you are using Ubuntu Linux version 20.04 as your operating system. If you do not have a computer running Ubuntu, fear not. You can install Ubuntu as a virtual machine within your current operating system. It is all free.
The instructions for Windows computers are here:
• Install Ubuntu on Virt...
The instructions for Mac computers are here (from 0:00 to 5:37):
• How to Install Windows...
This tutorial utilizes RStudio:
rstudio.com/
(Rstudio also requires R: www.r-project....)
But you can just use my pre-configured Ubuntu Linux virtual machine! Read more below.
This tutorial uses a file called "output.xml," which we created in another tutorial entitled, "How to perform an analysis of molecular variance (AMOVA) using the program Arlequin." You can find that video here:
• How to perform an anal...
FYI:
I have made a Linux virtual machine that is pre-configured with population genetics and ecological niche modeling programs. I have made videos explaining how to hook up this virtual machine within your Mac or Windows computer, so that you can start using the pre-configured software without having to install any of them (and even without having to install Ubuntu Linux!).
Windows: • Ubuntu 20.04 virtual m...
Mac: • Ubuntu 20.04 virtual m...