How to generate 2D and 3D Interaction Analysis Images for Protein-Ligand Complexes

  Рет қаралды 731

Bioinformatics Insights

Bioinformatics Insights

Күн бұрын

Пікірлер: 19
@biryani6861
@biryani6861 Ай бұрын
Nice tutorial sir, really helpful, watching from Indonesia
@Bioinformaticsinsights
@Bioinformaticsinsights Ай бұрын
Thanks for the appreciation. I hope you will find my other videos helpful too.
@abidaliyousafzai3123
@abidaliyousafzai3123 Ай бұрын
Thank you so much, Dr. Ashfaq Ahmad for teaching us with such great methods and making learning so easy and perfect. ❤❤
@Bioinformaticsinsights
@Bioinformaticsinsights Ай бұрын
It's my pleasure. So nice of you
@Scholarshahabuddin
@Scholarshahabuddin Ай бұрын
Bundles of thanks sir, Please have a detailed video on gene pathway analysis
@Bioinformaticsinsights
@Bioinformaticsinsights Ай бұрын
You are most welcome. I can make a video on Gene Pathway Analysis.
@Scholarshahabuddin
@Scholarshahabuddin Ай бұрын
@@Bioinformaticsinsights thank you so much Sir!
@israelekoro8617
@israelekoro8617 Ай бұрын
Nice tutorial again. Thumbs up for demystifying Bioinformatics and CADD. I want to know what the -1/2 means on the oxygen atoms in the protein-ligand complex
@Bioinformaticsinsights
@Bioinformaticsinsights Ай бұрын
The -1/2 means partial negative charge on the oxygen atom.
@kutubashraf9208
@kutubashraf9208 Ай бұрын
Sir, thank you. Is there any way to measure distance between the amino acids of ligand and receptor?
@Bioinformaticsinsights
@Bioinformaticsinsights Ай бұрын
There are ways, like to do it in visualizer like DS viewer or PyMol etc. for PyMol I have covered a video. I will drop a link in the next reply. But you need distances in 2D like this one, then the most easiest one is Ligplot+. I haven't covered a video yet.
@Bioinformaticsinsights
@Bioinformaticsinsights Ай бұрын
kzbin.info/www/bejne/pYjZp6Jqp5eUbJosi=Is_mv8mVx2Rsjf9h
@israelekoro8617
@israelekoro8617 Ай бұрын
Is there a way to calculate and visualize the interaction distance between the Ligand and Amino acids of protein
@Bioinformaticsinsights
@Bioinformaticsinsights Ай бұрын
Here it is, I have covered in PyMol kzbin.info/www/bejne/pYjZp6Jqp5eUbJo
@israelekoro8617
@israelekoro8617 Ай бұрын
@@Bioinformaticsinsights I mean on the pose edit viewer
@Bioinformaticsinsights
@Bioinformaticsinsights Ай бұрын
I guess not. why not you try LigPlot+, it is easy and it also accept pymol as a plugin, a kind of extra functionality.
@parachinar009
@parachinar009 Ай бұрын
Keep the great things. Very informative n purposeful
@Bioinformaticsinsights
@Bioinformaticsinsights Ай бұрын
thanks for the appreciation. please do share it with others.
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