How To Run AutoDock Vina On Windows

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Күн бұрын

Пікірлер: 32

@clemmentine. 5 ай бұрын

pls help this : swig/python detected a memory leak of type “BHtree *”, no destructor found keeps popping up and I cant repair removed residues

@ABDELRAHMANAYMANMOHAMEDTOLBAA2 25 күн бұрын

depending on what should I select the grid box?

@fuuongnguyen28 11 ай бұрын

I have fusion structure Alphafold2 prediction showing pdb file, but it can not open in Autodock Vina, do you know how to solve it, thank you

@educont22 11 ай бұрын

There can be compatibility issues. You can simply open your PDB file in txt format check whether it follows standard PDB format required for Autodock Vina. Such as header formats. You can use other programs to correct PDB file, if there is any error in it.

@martinadikara 9 ай бұрын

Thank you

@StickpageGD Жыл бұрын

1.42 after i click finish Python shows up then dissappears then autodock doesn't launch. Can u help me solve this?

@uzmasanam04 Жыл бұрын

I'm facing the same problem.

@educont22 Жыл бұрын

On Windows, try running MGL Tools and AutoDock as an administrator. Right-click on the MGL Tools or AutoDock shortcut, and choose "Run as administrator." This can help ensure that the programs have the necessary permissions.@@uzmasanam04

@kksuperman98 6 ай бұрын

@@educont22 Good day to you. I tried "run as administrator", however, it showed the black background screen with code within 1 sec and nothing happened. What could i do with this? Thank you

@manurh9044 5 ай бұрын

@@kksuperman98 bro I'm facing the same issue, Have you found a solution yet?

@kksuperman98 5 ай бұрын

@@manurh9044 I don't find any solution yet for that computer, but it totally works fine when I installed to another computer.

@_ash_9637 11 ай бұрын

Thank u for this explanation but i want to ask why i keep getting this error message "vina : The term 'vina' is not recognized as the name of a cmdlet, function, script file, or operable program."

@educont22 11 ай бұрын

Were there any spelling mistakes in the script?

@LuzElenaCastrellon 3 ай бұрын

hi, i had the same error, i tried .\vina and it got solved!

@NehaSharma-hd2so Жыл бұрын

mgl tools is showing error as ; " bad end of central directory"

@educont22 Жыл бұрын

Please ensure that the MGL Tools zip file you downloaded is complete and hasn't been corrupted during the download process. You can try re-downloading the file and attempting the extraction again.

@SabaAzeem-i8o 10 ай бұрын

After using the command prompt, it says 'Access denied'. How to solve this issue?

@martinadikara 9 ай бұрын

Are you accessing the CMD using a non-administrator account?

@srishtiboral8033 10 ай бұрын

After using command prompt, it says Command line parse error: too many positional options

@educont22 9 ай бұрын

The error message "Command line parse error: too many positional options" in AutoDock Vina typically indicates that there are too many arguments or options being passed to the command line. This error commonly occurs when the syntax of the command is incorrect, or when extra parameters are added that the program does not recognize. To resolve this issue, ensure that you are using the correct syntax for running AutoDock Vina from the command line. Here's an example of the basic syntax for running AutoDock Vina: vina --ligand --receptor --config --out

@drjagadishdasari2294 6 ай бұрын

Hi dear ….. when i load molecule in autodock it is not showing any moleculecan you please explain why ? It is not showing any molecule in autodock …. Thanks a lot waiting for your reply

@educont22 6 ай бұрын

Are you using molecules in PDBQT format? please check.

@drjagadishdasari2294 6 ай бұрын

@@educont22 Yes I am Uning. I have uninstalled AutoDock and reinstalled it, but the problem persists. Whenever I try to open the PDBQT molecule in AutoDock, it just shows a blank screen. Could you please assist me in resolving this issue and ensuring that the PDBQT molecule can be successfully opened in AutoDock? Thanks Once again

@educont22 6 ай бұрын

@@drjagadishdasari2294 In that case, can you open your PDBQT file as a text file, and ensure that is not empty or contains some unexpected characters. Also, you can adjust the zoom level and check whether the zooming level is out of the visual field of your molecule. When you open the molecules, please also check that your molecule is selected in the left-hand panel (S L B C RMS L CI) at least one should be chosen.

@阿尔达 Жыл бұрын

When I open the ligand it says zero division error

@educont22 11 ай бұрын

Ensure that the input parameters you are providing to AutoDock Vina are appropriate and do not result in division by zero. Double-check the values you are using for the grid dimensions, exhaustiveness, or any other relevant parameters.

@阿尔达 11 ай бұрын

@@educont22 The pdb file that my prof send to me had an error actually. Ty for the answer and also the video.

@СергійВасильовичСупрунович 11 ай бұрын

MGLTools crash my Windows 7 system forcing it to reboot :(

@educont22 11 ай бұрын

Right-click on the MGLTools executable or shortcut. Select "Properties." Navigate to the "Compatibility" tab. Check the box for "Run this program in compatibility mode for:" and select a compatible operating system (e.g., Windows XP or Windows Vista). Click "Apply" and then "OK."