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Text can be embossed or engraved into 3D images using "Engrave" effect in 3D Slicer's Segment Editor module. This video shows recent improvements in positioning and sizing of the text.
To try these new features, install SegmentEditorExtraEffects extension in latest version of 3D Slicer - www.slicer.org
3D Slicer and SegmentEditorExtraEffects extensions are free, open-source, restriction-free software.