Movie Making from molecular dynamics simulation with VMD

  Рет қаралды 33,867

Mohamed shehata

Mohamed shehata

Күн бұрын

Пікірлер: 28
@GiatrasKon
@GiatrasKon 2 жыл бұрын
A very informative and concise tutorial, thank you so much for making it!
@Mohamedshehata
@Mohamedshehata 2 жыл бұрын
@nikhillohar5518
@nikhillohar5518 3 жыл бұрын
Hi.. I want movie of ligand protein complex how can I get this.?
@stuartlutimba6867
@stuartlutimba6867 3 жыл бұрын
Hi! Some time the enconder by mpeg should be changed to be viewed in quick time (mac player)
@EktaGupta-br9jp
@EktaGupta-br9jp 2 жыл бұрын
Such an informative video. Thank you very much for sharing it.
@sofiaruizhernandez5083
@sofiaruizhernandez5083 3 ай бұрын
Gracias! me ayudó mucho para mi tesis
@raisulawal9673
@raisulawal9673 3 жыл бұрын
Can I make video on VMD using all snapshots of pdb files? If it is possible, how to do it?
@ivangregoretti4554
@ivangregoretti4554 8 ай бұрын
Hi Mohamed. Thanks so much for the video. Short, sweet and packed with information. Could you point us to tcl scripts for making a movie like this one programmatically? Thank you.
@Mohamedshehata
@Mohamedshehata 8 ай бұрын
Yes, sure. I posted one to do it with the GUI but I may post a scripted one soon. Thanks Ivan for the suggestion!
@yeshwanthm1399
@yeshwanthm1399 3 жыл бұрын
Great! Video, which video quality-renderer is preferred while submitting to Journals
@Mohamedshehata
@Mohamedshehata 3 жыл бұрын
sure not snapshot
@mvkishore8954
@mvkishore8954 3 жыл бұрын
How to calculate mmpbsa with vmd. How to use CaFE plugin. Please clear my doubt.
@박종범-h1o
@박종범-h1o 3 жыл бұрын
I sincerely hope the video to calculate mmpbsa with vmd too! please help me!
@dr.ahmedsayed1141
@dr.ahmedsayed1141 3 жыл бұрын
Thank you for sharing ur knowledge with us. Do you know whether it is possible to export VMD files to other graphic software like Maya?
@manjari3112
@manjari3112 3 жыл бұрын
Hello sir, your video quite helped me in learning simulation, please help me out in simulating one protein with multiple ligands. is it possible with NAMD? If yes, please suggest a way. thanku.
@nhathoangvanle8394
@nhathoangvanle8394 3 жыл бұрын
I have this issue when I followed your step, No VideoMach executable. Do you know what the reason for this is? Please help.
@abhishekrai7998
@abhishekrai7998 2 жыл бұрын
Hi, i am not able to set movie duration(in seconds). It is showing warning box that i cant change movie duration for TRajectory
@tanushreedas6190
@tanushreedas6190 2 жыл бұрын
Very helpful video. Thank you.
@Jackson-Alotaibi2016
@Jackson-Alotaibi2016 2 жыл бұрын
I need your help, please. How can l talk with you
@shanzayahmed3549
@shanzayahmed3549 3 жыл бұрын
Hi, Your video was extremely informative. I was able to make simulation videos for one of my targets. However, in case of my second target no MPEG1 output file is generated. It says that the movie generation is complete but i dont see any other related information that comes with completion like the no. Of frames being read or the time taken for completion etc. Can u plz help me out. Wud really appreciate it
@noumanali9331
@noumanali9331 3 жыл бұрын
How much ns is required for a good MD simulation movie?
@Mohamedshehata
@Mohamedshehata 3 жыл бұрын
depends in what you want to see could be 1ns could be 1000ns :)
@joseysraeldeleon2448
@joseysraeldeleon2448 2 жыл бұрын
thanks bro, great video!
@zainabahsan2369
@zainabahsan2369 3 жыл бұрын
Showing this problem during MD_Run.namd Info: USING ARITHMETIC MEAN TO COMBINE L-J SIGMA PARAMETERS FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE ./toppar_water_ions.str LINE=*set nat ?NATC* FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE ./toppar_water_ions.str LINE=*set nat ?NATC*
@neto_taekwondo
@neto_taekwondo 2 жыл бұрын
thank you
@DarrellHolmes-q3u
@DarrellHolmes-q3u 4 ай бұрын
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