A very informative and concise tutorial, thank you so much for making it!
@Mohamedshehata2 жыл бұрын
❤
@nikhillohar55183 жыл бұрын
Hi.. I want movie of ligand protein complex how can I get this.?
@stuartlutimba68673 жыл бұрын
Hi! Some time the enconder by mpeg should be changed to be viewed in quick time (mac player)
@EktaGupta-br9jp2 жыл бұрын
Such an informative video. Thank you very much for sharing it.
@sofiaruizhernandez50833 ай бұрын
Gracias! me ayudó mucho para mi tesis
@raisulawal96733 жыл бұрын
Can I make video on VMD using all snapshots of pdb files? If it is possible, how to do it?
@ivangregoretti45548 ай бұрын
Hi Mohamed. Thanks so much for the video. Short, sweet and packed with information. Could you point us to tcl scripts for making a movie like this one programmatically? Thank you.
@Mohamedshehata8 ай бұрын
Yes, sure. I posted one to do it with the GUI but I may post a scripted one soon. Thanks Ivan for the suggestion!
@yeshwanthm13993 жыл бұрын
Great! Video, which video quality-renderer is preferred while submitting to Journals
@Mohamedshehata3 жыл бұрын
sure not snapshot
@mvkishore89543 жыл бұрын
How to calculate mmpbsa with vmd. How to use CaFE plugin. Please clear my doubt.
@박종범-h1o3 жыл бұрын
I sincerely hope the video to calculate mmpbsa with vmd too! please help me!
@dr.ahmedsayed11413 жыл бұрын
Thank you for sharing ur knowledge with us. Do you know whether it is possible to export VMD files to other graphic software like Maya?
@manjari31123 жыл бұрын
Hello sir, your video quite helped me in learning simulation, please help me out in simulating one protein with multiple ligands. is it possible with NAMD? If yes, please suggest a way. thanku.
@nhathoangvanle83943 жыл бұрын
I have this issue when I followed your step, No VideoMach executable. Do you know what the reason for this is? Please help.
@abhishekrai79982 жыл бұрын
Hi, i am not able to set movie duration(in seconds). It is showing warning box that i cant change movie duration for TRajectory
@tanushreedas61902 жыл бұрын
Very helpful video. Thank you.
@Jackson-Alotaibi20162 жыл бұрын
I need your help, please. How can l talk with you
@shanzayahmed35493 жыл бұрын
Hi, Your video was extremely informative. I was able to make simulation videos for one of my targets. However, in case of my second target no MPEG1 output file is generated. It says that the movie generation is complete but i dont see any other related information that comes with completion like the no. Of frames being read or the time taken for completion etc. Can u plz help me out. Wud really appreciate it
@noumanali93313 жыл бұрын
How much ns is required for a good MD simulation movie?
@Mohamedshehata3 жыл бұрын
depends in what you want to see could be 1ns could be 1000ns :)
@joseysraeldeleon24482 жыл бұрын
thanks bro, great video!
@zainabahsan23693 жыл бұрын
Showing this problem during MD_Run.namd Info: USING ARITHMETIC MEAN TO COMBINE L-J SIGMA PARAMETERS FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE ./toppar_water_ions.str LINE=*set nat ?NATC* FATAL ERROR: UNKNOWN PARAMETER IN CHARMM PARAMETER FILE ./toppar_water_ions.str LINE=*set nat ?NATC*