RIBO-seq analysis pipeline: Snakemake tutorial

[@SubramanianThothathri]

Can you please make a video from the top to bottom analysis for Ribo seq? I see you mention that RNAseq is paired with Ribo seq. How does that work? Does the workflow during analysis integrate the same? Loving the content!

[@MorganMarcos]

Thanks for the comment. I am glad you are finding the content useful. The pipeline in this video prepares the RNA-seq and the ribosome footprinting count matrixes in parallel. However, our implementation provides the RNA-seq count matrix to Xtail instead of DEseq. Internally, Xtail will run the DEseq for the RNA-seq and ribosome footprint count matrixes and then compare them. This video explains the strategy used towards the end kzbin.info/www/bejne/pIvEi2muppxnf68.