RNA-SEQ WITH THE UCSC GENOME BROWSER

[@kathywest6718]

Really clear explanation - thanks!

[@GenomicsGurus]

Thanks 👍

[@leilakianmehr9092]

Very helpful , thanks

[@GenomicsGurus]

You’re welcome!

[@ralfhoffmann9177]

Thank you for this nice video! How do you get your own RNAseq data set up into genome browser for these type of analysis?

[@GenomicsGurus]

Make an account on cyverse and host your large files there, then link them in a custom track on ucsc. Can be bigwig or bam if I remember rightly - check out the instructions on ucsc.

[@AnswersInAtheism]

Frustrating for newcomers is that now the ucsc browser has no reference to REMC or the roadmap project that I can find on any track config.

[@GenomicsGurus]

You can find the roadmap data if you look in the track hub section - "Roadmap Epigenomics Data Complete Collection at Wash U VizHub" on Hg19 and hg38. Hope this is what you are looking for?