281 - Segmenting whole slide images (WSI) for nuclei using StarDist in python

Code generated in the video can be downloaded from here:
github.com/bns...
This video tutorial walks you through the process of importing whole slide H&E stained images (e.g., .svs format), segmenting nuclei using a pre-trained model, and reporting the measurements of the segmented nuclei.
Prepare to be amazed by the power of StarDist.

[@zakariaabderrahmanesadelao3048]

Once again, thank you for your thoroughness in teaching.

[@DigitalSreeni]

My pleasure!

[@dasmg1562]

These videos are Gold. Thank you Sreeni

[@DigitalSreeni]

Thanks.

[@منةالرحمن]

KZbin need to give us ability of making more than one "like" it's unfair for your videos 👍👍👍👍

[@alimoradkhajehzadeh7453]

Hello Mr Sreeni. Thank you for your very useful videos. I was wondering if you could help me to find the best method for detecting facial skin wrinkle detection

[@rakshitrohan4155]

Can you please tell how do you find these latest resources that work for digital health dataset?

[@AnılC.GüzelerÖğr.Gör]

Hi Mr. Sireeni, I'm interested in histopathological image analysis and I watch your videos with interest. Could you share the image you processed in this video? I couldn't find it in your github files. Thank you for your videos and work.

[@rakshitrohan4155]

These videos have helped me very much. Thanks a lot!

[@DigitalSreeni]

Glad you like them!

[@anshumansharma7720]

Can you please upload a video on how to predict on WSI image using U net model....

[@moumitamoitra1829]

I learned image segmentation techniques mostly from your tutorials. I have some hand written text documents and I want to segment words and characters from that. Could you suggest me any libraries or if possible then please make some video on that topic also.

[@akhileshtripathi1807]

sir please upload video on ADNI data set .

[@oriy294]

Hello👋 Thanks a lot for sharing your helpful information. 🙏🏻 Unfortunately, your videos have low quality, low resolution. I can't read the codes clearly.

[@SlazeM7]

Awesome stuff as always! Can you do a video on brain registrations to the Allen CCF?

[@DigitalSreeni]

May be some day. In the mean time, you can check this library: github.com/brainglobe/bg-atlasapi

[@SlazeM7]

@@DigitalSreeni Awesome repository. But I was looking for solutions for single whole brain slices.