Genome Mapping and Visualization with Bowtie2 & IGV

[@bioinformaticscoach]

Download the ebook and commands here: www.patreon.com/posts/genome-mapping-78145935

[@ZaenulMunnier]

Thanks for the bioinfromatics videos. Have you got video about structural variation calling?

[@junaidyousaf9240]

After this video, which video should I watch for stats in R

[@sreeram6416]

lots of love and respect from INDIA sir

[@velamuriishwarya7100]

Thank you. It was really helpful.

[@ceci5393]

Really useful to me all your videos!! thanks a lot!! very clear. I would like to filter the reads mapped. Which is the tutorial where you explain this? Thank you again and greetings from Argentina 😊

[@bioinformaticscoach]

At the moment, there is one video.kzbin.info/www/bejne/d3_Oo5ltoM17Y9k I am working on other filtering videos. But if you need help urgently , you can book a session with me clarity.fm/search/vincentappiah

[@ceci5393]

@@bioinformaticscoach Thank you very much for your answer! I´m going to do it now!

[@bioinformaticscoach]

@@ceci5393 here is the link to book a session: clarity.fm/search/vincentappiah

[@abelinoskosmos1679]

is there a way to make the output in fastq.gz format instead of .SAM? thanks

[@bioinformaticscoach]

Yes. It's possible. You can use samtools to do that.

[@wemakecreators3101]

I have my owm fungus sequencing data I tried doing same with my data and alingmemt rate comes out 1.12%

[@bioinformaticscoach]

You need to make sure you are using the correct reference sequence. You can also do QC to check if you have enough reads

[@serychristianrenaud]

Thank