Thanks. A video on sequence cleaning in Multiple sequence alignment is much appreciated.
@emmachapman58513 жыл бұрын
This was incredibly useful and clear, you've really helped me to understand the links between the biology and visualization on the alignments (better than any of my MSc professors...) - thank you so much!
@janeckagenomics27192 жыл бұрын
Glad it was helpful! Thanks!
@dogeofthesouth59988 ай бұрын
Very useful for my Biology class, thank you!
@manueltiburtini65283 жыл бұрын
Thank you for the lesson!
@johnkruger23632 жыл бұрын
Amazing! Thanks from Sweden :)
@aidesbnlee54222 жыл бұрын
Such a good tutorial!!!
@ermiyasshibesh339618 күн бұрын
Thank you so much for such an informative and constructive tutorial. Please I am looking for how to get SNPs, Allele frequency, heterozygosity and homozygosity.
@nandagouvea Жыл бұрын
Thank you!
@bipinkb86062 жыл бұрын
I could not change my txt document to fasta even if I have renamed and if I use MEGA to save the file, it just shows MAS format, not FASTA format. As I use MAS format file to align using MUSCLE, it shows error, how to overcome this problem?
@OsvaldoLaurindo2 жыл бұрын
Nice and clear, but please help me, I am trying to do a multiple alignment of sequences using Muscle but keeps getting an error "Stop codon(s) are found in the translated sequences. Please select a correct Genetic Code or coding frame." What am I missing?
@williamminahua90852 жыл бұрын
Thanks a lot.
@eswinipi2 жыл бұрын
Whenever I try to align a series of whole DNA sequences (from bacteria) the software keeps giving me an error message "MUSLCE log file did not end properly, suggesting an unhandled exception" and I am not sure what does that mean. I downloaded all my files from NCBI and they all are in .FASTA files.
@user-fx3ed8kp7w3 жыл бұрын
Can you tell me how to make a partial selection instead of a full selection?plz
@harrylovestres3 жыл бұрын
Great video lecture! Can we have your tutorial on alignment trimming and editing? Thanks
@janeckagenomics27192 жыл бұрын
Sure thing! Will try to get that up soon.
@aamir9559 Жыл бұрын
How would you replicate this for 5 different genes at once? For example Cox1,2,3 cytb and RAG1 for a number of species?
@Iamikram19988 ай бұрын
Love it
@bipinkb85192 жыл бұрын
It is Showing error message, while I go with "Align DNA" using MUSCLE. How can I overcome that problem?
@desaishailesh3527 Жыл бұрын
hello nice turorial, well i have whole mitochondiral sequence of 300 individual, obtained from NCBI, and after trimming i am doing alignment and its though producigng more gap and increasing sits number from 15K to 21 K, is it ohk ?
@tobyjones7292 Жыл бұрын
Does the DNA work for RNA sequences
@user-lh8yw6fi1w4 ай бұрын
Did you end up making a video on getting just the coding sequences?
@dr.mohanadbiotech52032 жыл бұрын
Its a very good lecture ... dear sir if you can to make a lecture about SNPs detection and allele frequency from multiple genes sequences as well as how calculate hardy-weinberg equation, I will be very grateful from you ... thank you so much
@janeckagenomics27192 жыл бұрын
Thank you for the topic suggestions. Yes, I can do that - those are all important. I will break those into several videos and over the next month or two.
@misbahmajid704 Жыл бұрын
Mega software website is not loading...I had to download it..please help
@wen46612 жыл бұрын
I need at least 10 sequences how can i do ?
@Hikl-mk1kj7 ай бұрын
i am not able to change type of my file🙂
@BongiCekuse3 жыл бұрын
I see a lot of articles include the alignment in their papers. How do you download that Mega sequence alignment and have it be in that same format they publish?
@janeckagenomics27192 жыл бұрын
You first need to check what kind of alignment format they are using. With your own alignment open in MEGAX you can go to "Data" then "Export Alignment" and select the format you want. In MEGAX, the only options are MEGA, FASTA, and NEXUS/PAUP. If you need your alignment in a different format I would export it as FASTA and then search for a program to convert it to the one you want. Hope this helps.